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Results: 1 to 20 of 106

1.

Functional specificity of a protein-DNA complex mediated by two arginines bound to the minor groove.

Mendieta J, Pérez-Lago L, Salas M, Camacho A.

J Bacteriol. 2012 Sep;194(17):4727-35. doi: 10.1128/JB.00677-12. Epub 2012 Jun 29.

PMID:
22753063
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

DNA sequence-specific recognition by a transcriptional regulator requires indirect readout of A-tracts.

Mendieta J, Pérez-Lago L, Salas M, Camacho A.

Nucleic Acids Res. 2007;35(10):3252-61. Epub 2007 Apr 22.

PMID:
17452358
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A precise DNA bend angle is essential for the function of the phage phi29 transcriptional regulator.

Pérez-Lago L, Salas M, Camacho A.

Nucleic Acids Res. 2005 Jan 7;33(1):126-34. Print 2005.

PMID:
15642698
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Indirect readout of DNA sequence by p22 repressor: roles of DNA and protein functional groups in modulating DNA conformation.

Harris LA, Watkins D, Williams LD, Koudelka GB.

J Mol Biol. 2013 Jan 9;425(1):133-43. doi: 10.1016/j.jmb.2012.10.008. Epub 2012 Oct 17.

PMID:
23085222
[PubMed - indexed for MEDLINE]
5.

The structure of phage phi29 transcription regulator p4-DNA complex reveals an N-hook motif for DNA.

Badia D, Camacho A, Pérez-Lago L, Escandón C, Salas M, Coll M.

Mol Cell. 2006 Apr 7;22(1):73-81.

PMID:
16600871
[PubMed - indexed for MEDLINE]
Free Article
7.
8.

The role of DNA structure and dynamics in the recognition of bovine papillomavirus E2 protein target sequences.

Djuranovic D, Oguey C, Hartmann B.

J Mol Biol. 2004 Jun 11;339(4):785-96. Erratum in: J Mol Biol. 2005 Jul 1;350(1):184.

PMID:
15165850
[PubMed - indexed for MEDLINE]
9.

Recognition of 5'-YpG-3' sequences by coupled stacking/hydrogen bonding interactions with amino acid residues.

Lamoureux JS, Maynes JT, Glover JN.

J Mol Biol. 2004 Jan 9;335(2):399-408.

PMID:
14672650
[PubMed - indexed for MEDLINE]
10.

Molecular interactions and protein-induced DNA hairpin in the transcriptional control of bacteriophage ø29 DNA.

Camacho A, Salas M.

Int J Mol Sci. 2010;11(12):5129-42. doi: 10.3390/ijms11125129. Epub 2010 Dec 13.

PMID:
21614197
[PubMed - in process]
Free PMC Article
11.

Transcriptional activator of phage phi 29 late promoter: mapping of residues involved in interaction with RNA polymerase and in DNA bending.

Mencía M, Monsalve M, Salas M, Rojo F.

Mol Microbiol. 1996 Apr;20(2):273-82.

PMID:
8733227
[PubMed - indexed for MEDLINE]
12.

Residues of the Bacillus subtilis phage phi 29 transcriptional activator required both to interact with RNA polymerase and to activate transcription.

Mencía M, Salas M, Rojo F.

J Mol Biol. 1993 Oct 20;233(4):695-704.

PMID:
8411175
[PubMed - indexed for MEDLINE]
13.

Carboxyl-terminal domain dimer interface mutant 434 repressors have altered dimerization and DNA binding specificities.

Donner AL, Paa K, Koudelka GB.

J Mol Biol. 1998 Nov 13;283(5):931-46.

PMID:
9799634
[PubMed - indexed for MEDLINE]
14.
15.

Phage P4 origin-binding domain structure reveals a mechanism for regulation of DNA-binding activity by homo- and heterodimerization of winged helix proteins.

Yeo HJ, Ziegelin G, Korolev S, Calendar R, Lanka E, Waksman G.

Mol Microbiol. 2002 Feb;43(4):855-67.

PMID:
11929537
[PubMed - indexed for MEDLINE]
16.

On the connection between inherent DNA flexure and preferred binding of hydroxymethyluracil-containing DNA by the type II DNA-binding protein TF1.

Grove A, Galeone A, Mayol L, Geiduschek EP.

J Mol Biol. 1996 Jul 12;260(2):196-206.

PMID:
8764400
[PubMed - indexed for MEDLINE]
17.

Bacteriophage Ø29 protein p6: an architectural protein involved in genome organization, replication and control of transcription.

González-Huici V, Alcorlo M, Salas M, Hermoso JM.

J Mol Recognit. 2004 Sep-Oct;17(5):390-6. Review.

PMID:
15362097
[PubMed - indexed for MEDLINE]
18.

DNA bending and looping in the transcriptional control of bacteriophage phi29.

Camacho A, Salas M.

FEMS Microbiol Rev. 2010 Sep;34(5):828-41. doi: 10.1111/j.1574-6976.2010.00219.x. Epub 2010 Mar 17. Review.

PMID:
20412311
[PubMed - indexed for MEDLINE]
19.

Sequence recognition of DNA by protein-induced conformational transitions.

Watkins D, Mohan S, Koudelka GB, Williams LD.

J Mol Biol. 2010 Mar 5;396(4):1145-64. doi: 10.1016/j.jmb.2009.12.050. Epub 2010 Jan 4.

PMID:
20053356
[PubMed - indexed for MEDLINE]
20.

Empirical free energy calculations of phage 434 repressor- and cro-DNA complexes support the 'indirect readout' hypothesis of specificity.

Brown LM, Bruccoleri RE, Novotny J.

Pac Symp Biocomput. 1998:339-48.

PMID:
9697194
[PubMed - indexed for MEDLINE]

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