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Items: 1 to 20 of 272

1.

Transcriptome survey of Patagonian southern beech Nothofagus nervosa (= N. Alpina): assembly, annotation and molecular marker discovery.

Torales SL, Rivarola M, Pomponio MF, Fernández P, Acuña CV, Marchelli P, Gonzalez S, Azpilicueta MM, Hopp HE, Gallo LA, Paniego NB, Poltri SN.

BMC Genomics. 2012 Jul 2;13:291. doi: 10.1186/1471-2164-13-291.

2.

De novo assembly and characterization of leaf transcriptome for the development of functional molecular markers of the extremophile multipurpose tree species Prosopis alba.

Torales SL, Rivarola M, Pomponio MF, Gonzalez S, Acuña CV, Fernández P, Lauenstein DL, Verga AR, Hopp HE, Paniego NB, Poltri SN.

BMC Genomics. 2013 Oct 14;14:705. doi: 10.1186/1471-2164-14-705.

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4.

Generation and analysis of blueberry transcriptome sequences from leaves, developing fruit, and flower buds from cold acclimation through deacclimation.

Rowland LJ, Alkharouf N, Darwish O, Ogden EL, Polashock JJ, Bassil NV, Main D.

BMC Plant Biol. 2012 Apr 2;12:46. doi: 10.1186/1471-2229-12-46.

5.

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing.

Kalavacharla V, Liu Z, Meyers BC, Thimmapuram J, Melmaiee K.

BMC Plant Biol. 2011 Oct 11;11:135. doi: 10.1186/1471-2229-11-135.

6.

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes.

Ashrafi H, Hill T, Stoffel K, Kozik A, Yao J, Chin-Wo SR, Van Deynze A.

BMC Genomics. 2012 Oct 30;13:571. doi: 10.1186/1471-2164-13-571.

7.

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweet potato (Ipomoea batatas).

Wang Z, Fang B, Chen J, Zhang X, Luo Z, Huang L, Chen X, Li Y.

BMC Genomics. 2010 Dec 24;11:726. doi: 10.1186/1471-2164-11-726.

8.

Development and validation of genic-SSR markers in sesame by RNA-seq.

Zhang H, Wei L, Miao H, Zhang T, Wang C.

BMC Genomics. 2012 Jul 16;13:316. doi: 10.1186/1471-2164-13-316.

9.

De novo assembly of the Indo-Pacific humpback dolphin leucocyte transcriptome to identify putative genes involved in the aquatic adaptation and immune response.

Gui D, Jia K, Xia J, Yang L, Chen J, Wu Y, Yi M.

PLoS One. 2013 Aug 28;8(8):e72417. doi: 10.1371/journal.pone.0072417. eCollection 2013.

10.
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Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development.

Passos MA, de Cruz VO, Emediato FL, de Teixeira CC, Azevedo VC, Brasileiro AC, Amorim EP, Ferreira CF, Martins NF, Togawa RC, Júnior GJ, da Silva OB Jr, Miller RN.

BMC Genomics. 2013 Feb 5;14:78. doi: 10.1186/1471-2164-14-78.

12.

De novo assembly, gene annotation, and marker discovery in stored-product pest Liposcelis entomophila (Enderlein) using transcriptome sequences.

Wei DD, Chen EH, Ding TB, Chen SC, Dou W, Wang JJ.

PLoS One. 2013 Nov 14;8(11):e80046. doi: 10.1371/journal.pone.0080046. eCollection 2013.

13.

Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak.

Ueno S, Le Provost G, Léger V, Klopp C, Noirot C, Frigerio JM, Salin F, Salse J, Abrouk M, Murat F, Brendel O, Derory J, Abadie P, Léger P, Cabane C, Barré A, de Daruvar A, Couloux A, Wincker P, Reviron MP, Kremer A, Plomion C.

BMC Genomics. 2010 Nov 23;11:650. doi: 10.1186/1471-2164-11-650.

14.

Large scale in-silico identification and characterization of simple sequence repeats (SSRs) from de novo assembled transcriptome of Catharanthus roseus (L.) G. Don.

Kumar S, Shah N, Garg V, Bhatia S.

Plant Cell Rep. 2014 Jun;33(6):905-18. doi: 10.1007/s00299-014-1569-8. Epub 2014 Feb 1.

PMID:
24482265
15.

RNA-seq analysis of Quercus pubescens Leaves: de novo transcriptome assembly, annotation and functional markers development.

Torre S, Tattini M, Brunetti C, Fineschi S, Fini A, Ferrini F, Sebastiani F.

PLoS One. 2014 Nov 13;9(11):e112487. doi: 10.1371/journal.pone.0112487. eCollection 2014.

16.

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.

Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA.

BMC Genomics. 2010 Mar 16;11:180. doi: 10.1186/1471-2164-11-180.

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18.

De novo assembly of transcriptome sequencing in Caragana korshinskii Kom. and characterization of EST-SSR markers.

Long Y, Wang Y, Wu S, Wang J, Tian X, Pei X.

PLoS One. 2015 Jan 28;10(1):e0115805. doi: 10.1371/journal.pone.0115805. eCollection 2015.

19.

De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing.

Liang C, Liu X, Yiu SM, Lim BL.

BMC Genomics. 2013 Mar 5;14:146. doi: 10.1186/1471-2164-14-146.

20.

De novo sequence assembly and characterization of Lycoris aurea transcriptome using GS FLX titanium platform of 454 pyrosequencing.

Wang R, Xu S, Jiang Y, Jiang J, Li X, Liang L, He J, Peng F, Xia B.

PLoS One. 2013 Apr 9;8(4):e60449. doi: 10.1371/journal.pone.0060449. Print 2013.

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