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Results: 1 to 20 of 207

1.

Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment.

Voelz VA, J├Ąger M, Yao S, Chen Y, Zhu L, Waldauer SA, Bowman GR, Friedrichs M, Bakajin O, Lapidus LJ, Weiss S, Pande VS.

J Am Chem Soc. 2012 Aug 1;134(30):12565-77. doi: 10.1021/ja302528z. Epub 2012 Jul 19.

PMID:
22747188
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Early kinetic intermediate in the folding of acyl-CoA binding protein detected by fluorescence labeling and ultrarapid mixing.

Teilum K, Maki K, Kragelund BB, Poulsen FM, Roder H.

Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9807-12. Epub 2002 Jul 2.

PMID:
12096190
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring the minimally frustrated energy landscape of unfolded ACBP.

Ozenne V, Noel JK, Heidarsson PO, Brander S, Poulsen FM, Jensen MR, Kragelund BB, Blackledge M, Danielsson J.

J Mol Biol. 2014 Feb 6;426(3):722-34. doi: 10.1016/j.jmb.2013.10.031. Epub 2013 Nov 7.

PMID:
24211721
[PubMed - indexed for MEDLINE]
4.

Transient intermediary states with high and low folding probabilities in the apparent two-state folding equilibrium of ACBP at low pH.

Thomsen JK, Kragelund BB, Teilum K, Knudsen J, Poulsen FM.

J Mol Biol. 2002 May 3;318(3):805-14.

PMID:
12054824
[PubMed - indexed for MEDLINE]
5.

How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory.

Deng NJ, Dai W, Levy RM.

J Phys Chem B. 2013 Oct 24;117(42):12787-99. doi: 10.1021/jp401962k. Epub 2013 Jun 13.

PMID:
23705683
[PubMed - indexed for MEDLINE]
6.

Short-range, long-range and transition state interactions in the denatured state of ACBP from residual dipolar couplings.

Fieber W, Kristjansdottir S, Poulsen FM.

J Mol Biol. 2004 Jun 18;339(5):1191-9.

PMID:
15178258
[PubMed - indexed for MEDLINE]
7.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
8.

Folding of horse cytochrome c in the reduced state.

Bhuyan AK, Udgaonkar JB.

J Mol Biol. 2001 Oct 5;312(5):1135-60.

PMID:
11580255
[PubMed - indexed for MEDLINE]
9.

Characterization of the folding and unfolding reactions of single-chain monellin: evidence for multiple intermediates and competing pathways.

Patra AK, Udgaonkar JB.

Biochemistry. 2007 Oct 23;46(42):11727-43. Epub 2007 Sep 29.

PMID:
17902706
[PubMed - indexed for MEDLINE]
10.

Structure and dynamics of an unfolded protein examined by molecular dynamics simulation.

Lindorff-Larsen K, Trbovic N, Maragakis P, Piana S, Shaw DE.

J Am Chem Soc. 2012 Feb 29;134(8):3787-91. doi: 10.1021/ja209931w. Epub 2012 Feb 16.

PMID:
22339051
[PubMed - indexed for MEDLINE]
11.

Unfolded-state dynamics and structure of protein L characterized by simulation and experiment.

Voelz VA, Singh VR, Wedemeyer WJ, Lapidus LJ, Pande VS.

J Am Chem Soc. 2010 Apr 7;132(13):4702-9. doi: 10.1021/ja908369h.

PMID:
20218718
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A highly compliant protein native state with a spontaneous-like mechanical unfolding pathway.

Heidarsson PO, Valpapuram I, Camilloni C, Imparato A, Tiana G, Poulsen FM, Kragelund BB, Cecconi C.

J Am Chem Soc. 2012 Oct 17;134(41):17068-75. doi: 10.1021/ja305862m. Epub 2012 Oct 4.

PMID:
23004011
[PubMed - indexed for MEDLINE]
13.

An early intermediate in the folding reaction of the B1 domain of protein G contains a native-like core.

Park SH, O'Neil KT, Roder H.

Biochemistry. 1997 Nov 25;36(47):14277-83.

PMID:
9400366
[PubMed - indexed for MEDLINE]
14.

Formation of native and non-native interactions in ensembles of denatured ACBP molecules from paramagnetic relaxation enhancement studies.

Kristjansdottir S, Lindorff-Larsen K, Fieber W, Dobson CM, Vendruscolo M, Poulsen FM.

J Mol Biol. 2005 Apr 15;347(5):1053-62. Epub 2005 Jan 27.

PMID:
15784263
[PubMed - indexed for MEDLINE]
15.

The inverted chevron plot measured by NMR relaxation reveals a native-like unfolding intermediate in acyl-CoA binding protein.

Teilum K, Poulsen FM, Akke M.

Proc Natl Acad Sci U S A. 2006 May 2;103(18):6877-82. Epub 2006 Apr 25.

PMID:
16641108
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Protein folded states are kinetic hubs.

Bowman GR, Pande VS.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10890-5. doi: 10.1073/pnas.1003962107. Epub 2010 Jun 1. Erratum in: Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16749.

PMID:
20534497
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Kinetic evidence for folding and unfolding intermediates in staphylococcal nuclease.

Walkenhorst WF, Green SM, Roder H.

Biochemistry. 1997 May 13;36(19):5795-805.

PMID:
9153420
[PubMed - indexed for MEDLINE]
18.

Transient structure formation in unfolded acyl-coenzyme A-binding protein observed by site-directed spin labelling.

Teilum K, Kragelund BB, Poulsen FM.

J Mol Biol. 2002 Nov 22;324(2):349-57.

PMID:
12441112
[PubMed - indexed for MEDLINE]
19.

Folding and stability of a tryptophan-containing mutant of ubiquitin.

Khorasanizadeh S, Peters ID, Butt TR, Roder H.

Biochemistry. 1993 Jul 13;32(27):7054-63.

PMID:
8392867
[PubMed - indexed for MEDLINE]
20.

Ratcheted molecular-dynamics simulations identify efficiently the transition state of protein folding.

Tiana G, Camilloni C.

J Chem Phys. 2012 Dec 21;137(23):235101. doi: 10.1063/1.4769085.

PMID:
23267502
[PubMed - indexed for MEDLINE]

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