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Results: 1 to 20 of 107

1.

A call for bioimaging software usability.

Carpenter AE, Kamentsky L, Eliceiri KW.

Nat Methods. 2012 Jun 28;9(7):666-70. doi: 10.1038/nmeth.2073.

PMID:
22743771
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Current challenges in open-source bioimage informatics.

Cardona A, Tomancak P.

Nat Methods. 2012 Jun 28;9(7):661-5. doi: 10.1038/nmeth.2082.

PMID:
22743770
[PubMed - indexed for MEDLINE]
3.

NIH Image to ImageJ: 25 years of image analysis.

Schneider CA, Rasband WS, Eliceiri KW.

Nat Methods. 2012 Jul;9(7):671-5.

PMID:
22930834
[PubMed - indexed for MEDLINE]
4.

The RUMBA software: tools for neuroimaging data analysis.

Bly BM, Rebbechi D, Hanson SJ, Grasso G.

Neuroinformatics. 2004;2(1):71-100.

PMID:
15067169
[PubMed - indexed for MEDLINE]
5.

[Software development of an image processing program for Mac].

Arimura H.

Nihon Hoshasen Gijutsu Gakkai Zasshi. 2010 Dec 20;66(12):1648-54. Review. Chinese. No abstract available.

PMID:
21282923
[PubMed - indexed for MEDLINE]
Free Article
6.

DYNAMIK: a software environment for cell DYNAmics, Motility, and Information tracKing, with an application to Ras pathways.

Jaeger S, Song Q, Chen SS.

Bioinformatics. 2009 Sep 15;25(18):2383-8. doi: 10.1093/bioinformatics/btp405. Epub 2009 Jul 4.

PMID:
19578170
[PubMed - indexed for MEDLINE]
Free Article
7.

Fiji: an open-source platform for biological-image analysis.

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A.

Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019.

PMID:
22743772
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

SPIRE: the SPIDER reconstruction engine.

Baxter WT, Leith A, Frank J.

J Struct Biol. 2007 Jan;157(1):56-63. Epub 2006 Aug 25.

PMID:
17055743
[PubMed - indexed for MEDLINE]
9.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

PMID:
22743775
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Tapetool: a software tool for importing image data from image acquisition computers to image processing computers.

Mandava VR, Maciunas RJ, Fitzpatrick JM.

Comput Methods Programs Biomed. 1990 Dec;33(4):213-9.

PMID:
2282788
[PubMed - indexed for MEDLINE]
11.

Fiswidgets: a graphical computing environment for neuroimaging analysis.

Fissell K, Tseytlin E, Cunningham D, Iyer K, Carter CS, Schneider W, Cohen JD.

Neuroinformatics. 2003;1(1):111-25.

PMID:
15055396
[PubMed - indexed for MEDLINE]
12.

Collaborative EM image processing with the IPLT image processing library and toolbox.

Philippsen A, Schenk AD, Signorell GA, Mariani V, Berneche S, Engel A.

J Struct Biol. 2007 Jan;157(1):28-37. Epub 2006 Jul 14.

PMID:
16919967
[PubMed - indexed for MEDLINE]
13.

Better bioinformatics through usability analysis.

Bolchini D, Finkelstein A, Perrone V, Nagl S.

Bioinformatics. 2009 Feb 1;25(3):406-12. doi: 10.1093/bioinformatics/btn633. Epub 2008 Dec 9.

PMID:
19073592
[PubMed - indexed for MEDLINE]
Free Article
14.

Web-based interactive 2D/3D medical image processing and visualization software.

Mahmoudi SE, Akhondi-Asl A, Rahmani R, Faghih-Roohi S, Taimouri V, Sabouri A, Soltanian-Zadeh H.

Comput Methods Programs Biomed. 2010 May;98(2):172-82. doi: 10.1016/j.cmpb.2009.11.012.

PMID:
20022133
[PubMed - indexed for MEDLINE]
15.

A software tool for interactive exploration of intrinsic functional connectivity opens new perspectives for brain surgery.

Böttger J, Margulies DS, Horn P, Thomale UW, Podlipsky I, Shapira-Lichter I, Chaudhry SJ, Szkudlarek C, Mueller K, Lohmann G, Hendler T, Bohner G, Fiebach JB, Villringer A, Vajkoczy P, Abbushi A.

Acta Neurochir (Wien). 2011 Aug;153(8):1561-72. doi: 10.1007/s00701-011-0985-6. Epub 2011 Apr 3.

PMID:
21461877
[PubMed - indexed for MEDLINE]
16.

Linking image quantitation and data analysis.

Bloom GC, Gieser P, Lazaridis EN.

Methods Mol Biol. 2002;184:15-27. Review. No abstract available.

PMID:
11889712
[PubMed - indexed for MEDLINE]
17.

The FARSIGHT trace editor: an open source tool for 3-D inspection and efficient pattern analysis aided editing of automated neuronal reconstructions.

Luisi J, Narayanaswamy A, Galbreath Z, Roysam B.

Neuroinformatics. 2011 Sep;9(2-3):305-15. doi: 10.1007/s12021-011-9115-0. No abstract available.

PMID:
21487683
[PubMed - indexed for MEDLINE]
18.

Developing a modern web interface for database-driven bioinformatics tools.

Khandheria P, Garner HR.

IEEE Eng Med Biol Mag. 2007 Mar-Apr;26(2):96-8. No abstract available.

PMID:
17441614
[PubMed - indexed for MEDLINE]
19.

Basic image analysis and manipulation in ImageJ.

Hartig SM.

Curr Protoc Mol Biol. 2013;Chapter 14:Unit14.15. doi: 10.1002/0471142727.mb1415s102.

PMID:
23547012
[PubMed - indexed for MEDLINE]
20.

iHOP web services.

Fernández JM, Hoffmann R, Valencia A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W21-6. Epub 2007 May 7.

PMID:
17485473
[PubMed - indexed for MEDLINE]
Free PMC Article
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