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Large-scale proteome comparative analysis of developing rhizomes of the ancient vascular plant equisetum hyemale.

Balbuena TS, He R, Salvato F, Gang DR, Thelen JJ.

Front Plant Sci. 2012 Jun 26;3:131. doi: 10.3389/fpls.2012.00131. eCollection 2012.


Comparative proteomic analysis of developing rhizomes of the ancient vascular plant Equisetum hyemale and different monocot species.

Salvato F, Balbuena TS, Nelson W, Rao RS, He R, Soderlund CA, Gang DR, Thelen JJ.

J Proteome Res. 2015 Apr 3;14(4):1779-91. doi: 10.1021/pr501157w. Epub 2015 Mar 5.


Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificity.

He R, Kim MJ, Nelson W, Balbuena TS, Kim R, Kramer R, Crow JA, May GD, Thelen JJ, Soderlund CA, Gang DR.

Am J Bot. 2012 Feb;99(2):232-47. doi: 10.3732/ajb.1100429. Epub 2012 Feb 1.


Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminata.

Hu F, Wang D, Zhao X, Zhang T, Sun H, Zhu L, Zhang F, Li L, Li Q, Tao D, Fu B, Li Z.

BMC Plant Biol. 2011 Jan 24;11:18. doi: 10.1186/1471-2229-11-18.


Cell wall proteome in the maize primary root elongation zone. II. Region-specific changes in water soluble and lightly ionically bound proteins under water deficit.

Zhu J, Alvarez S, Marsh EL, Lenoble ME, Cho IJ, Sivaguru M, Chen S, Nguyen HT, Wu Y, Schachtman DP, Sharp RE.

Plant Physiol. 2007 Dec;145(4):1533-48. Epub 2007 Oct 19.


Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.

Koo HJ, McDowell ET, Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR.

BMC Plant Biol. 2013 Feb 15;13:27. doi: 10.1186/1471-2229-13-27.


Reasons for the presence or absence of convective (pressurized) ventilation in the genus Equisetum.

Armstrong J, Armstrong W.

New Phytol. 2011 Apr;190(2):387-97. doi: 10.1111/j.1469-8137.2010.03539.x. Epub 2010 Nov 25.


Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotype.

Jang CS, Kamps TL, Tang H, Bowers JE, Lemke C, Paterson AH.

Heredity (Edinb). 2009 Mar;102(3):266-73. doi: 10.1038/hdy.2008.119. Epub 2008 Nov 12.


Analysis of the pumpkin phloem proteome provides insights into angiosperm sieve tube function.

Lin MK, Lee YJ, Lough TJ, Phinney BS, Lucas WJ.

Mol Cell Proteomics. 2009 Feb;8(2):343-56. doi: 10.1074/mcp.M800420-MCP200. Epub 2008 Oct 20.


An integrated approach of differential mass spectrometry and gene ontology analysis identified novel proteins regulating neuronal differentiation and survival.

Kobayashi D, Kumagai J, Morikawa T, Wilson-Morifuji M, Wilson A, Irie A, Araki N.

Mol Cell Proteomics. 2009 Oct;8(10):2350-67. doi: 10.1074/mcp.M900179-MCP200. Epub 2009 Jun 13.


Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes.

Yang W, Di Vizio D, Kirchner M, Steen H, Freeman MR.

Mol Cell Proteomics. 2010 Jan;9(1):54-70. doi: 10.1074/mcp.M800448-MCP200. Epub 2009 Oct 2.


Cell wall proteome in the maize primary root elongation zone. I. Extraction and identification of water-soluble and lightly ionically bound proteins.

Zhu J, Chen S, Alvarez S, Asirvatham VS, Schachtman DP, Wu Y, Sharp RE.

Plant Physiol. 2006 Jan;140(1):311-25. Epub 2005 Dec 23.


Label-free quantitative proteomics analysis of etiolated maize seedling leaves during greening.

Shen Z, Li P, Ni RJ, Ritchie M, Yang CP, Liu GF, Ma W, Liu GJ, Ma L, Li SJ, Wei ZG, Wang HX, Wang BC.

Mol Cell Proteomics. 2009 Nov;8(11):2443-60. doi: 10.1074/mcp.M900187-MCP200. Epub 2009 Aug 7.


Large scale comparative proteomics of a chloroplast Clp protease mutant reveals folding stress, altered protein homeostasis, and feedback regulation of metabolism.

Zybailov B, Friso G, Kim J, Rudella A, Rodríguez VR, Asakura Y, Sun Q, van Wijk KJ.

Mol Cell Proteomics. 2009 Aug;8(8):1789-1810. doi: 10.1074/mcp.M900104-MCP200.


Localization and quantification of Pb and nutrients in Typha latifolia by micro-PIXE.

Lyubenova L, Pongrac P, Vogel-Mikuš K, Mezek GK, Vavpetič P, Grlj N, Kump P, Nečemer M, Regvar M, Pelicon P, Schröder P.

Metallomics. 2012 Apr;4(4):333-41. doi: 10.1039/c2mt00179a. Epub 2012 Feb 28.


Structural and analytical studies of silica accumulations in Equisetum hyemale.

Sapei L, Gierlinger N, Hartmann J, Nöske R, Strauch P, Paris O.

Anal Bioanal Chem. 2007 Oct;389(4):1249-57. Epub 2007 Sep 5.


Megadalton complexes in the chloroplast stroma of Arabidopsis thaliana characterized by size exclusion chromatography, mass spectrometry, and hierarchical clustering.

Olinares PD, Ponnala L, van Wijk KJ.

Mol Cell Proteomics. 2010 Jul;9(7):1594-615. doi: 10.1074/mcp.M000038-MCP201. Epub 2010 Apr 26.

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