Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 113

1.

Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach.

Imam FT, Larson SD, Bandrowski A, Grethe JS, Gupta A, Martone ME.

Front Genet. 2012 Jun 22;3:111. doi: 10.3389/fgene.2012.00111. eCollection 2012.

2.

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME.

Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.

3.

Federated access to heterogeneous information resources in the Neuroscience Information Framework (NIF).

Gupta A, Bug W, Marenco L, Qian X, Condit C, Rangarajan A, Müller HM, Miller PL, Sanders B, Grethe JS, Astakhov V, Shepherd G, Sternberg PW, Martone ME.

Neuroinformatics. 2008 Sep;6(3):205-17. doi: 10.1007/s12021-008-9033-y. Epub 2008 Oct 29.

4.

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources.

Marenco LN, Wang R, Bandrowski AE, Grethe JS, Shepherd GM, Miller PL.

Front Neuroinform. 2014 May 28;8:58. doi: 10.3389/fninf.2014.00058. eCollection 2014.

5.

Terminology for neuroscience data discovery: multi-tree syntax and investigator-derived semantics.

Gardner D, Goldberg DH, Grafstein B, Robert A, Gardner EP.

Neuroinformatics. 2008 Sep;6(3):161-74. doi: 10.1007/s12021-008-9029-7. Epub 2008 Oct 29.

6.

Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.

Samwald M, Chen H, Ruttenberg A, Lim E, Marenco L, Miller P, Shepherd G, Cheung KH.

Artif Intell Med. 2010 Jan;48(1):21-8. doi: 10.1016/j.artmed.2009.11.003. Epub 2009 Dec 16.

7.

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.

Roncaglia P, Martone ME, Hill DP, Berardini TZ, Foulger RE, Imam FT, Drabkin H, Mungall CJ, Lomax J.

J Biomed Semantics. 2013 Oct 7;4(1):20. doi: 10.1186/2041-1480-4-20.

8.

BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications.

Whetzel PL, Noy NF, Shah NH, Alexander PR, Nyulas C, Tudorache T, Musen MA.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W541-5. doi: 10.1093/nar/gkr469. Epub 2011 Jun 14.

9.

Disease Ontology: a backbone for disease semantic integration.

Schriml LM, Arze C, Nadendla S, Chang YW, Mazaitis M, Felix V, Feng G, Kibbe WA.

Nucleic Acids Res. 2012 Jan;40(Database issue):D940-6. doi: 10.1093/nar/gkr972. Epub 2011 Nov 12.

10.

The NIF DISCO Framework: facilitating automated integration of neuroscience content on the web.

Marenco L, Wang R, Shepherd GM, Miller PL.

Neuroinformatics. 2010 Jun;8(2):101-12. doi: 10.1007/s12021-010-9068-8.

11.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

12.

NCBO Technology: Powering semantically aware applications.

Whetzel PL; NCBO Team.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S8. doi: 10.1186/2041-1480-4-S1-S8. Epub 2013 Apr 15.

13.

A knowledge based approach to matching human neurodegenerative disease and animal models.

Maynard SM, Mungall CJ, Lewis SE, Imam FT, Martone ME.

Front Neuroinform. 2013 May 14;7:7. doi: 10.3389/fninf.2013.00007. eCollection 2013.

14.

Open semantic annotation of scientific publications using DOMEO.

Ciccarese P, Ocana M, Clark T.

J Biomed Semantics. 2012 Apr 24;3 Suppl 1:S1. doi: 10.1186/2041-1480-3-S1-S1.

15.

The neuroscience information framework: a data and knowledge environment for neuroscience.

Gardner D, Akil H, Ascoli GA, Bowden DM, Bug W, Donohue DE, Goldberg DH, Grafstein B, Grethe JS, Gupta A, Halavi M, Kennedy DN, Marenco L, Martone ME, Miller PL, Müller HM, Robert A, Shepherd GM, Sternberg PW, Van Essen DC, Williams RW.

Neuroinformatics. 2008 Sep;6(3):149-60. doi: 10.1007/s12021-008-9024-z. Epub 2008 Oct 23.

16.

NeuroMorpho.Org implementation of digital neuroscience: dense coverage and integration with the NIF.

Halavi M, Polavaram S, Donohue DE, Hamilton G, Hoyt J, Smith KP, Ascoli GA.

Neuroinformatics. 2008 Sep;6(3):241-52. doi: 10.1007/s12021-008-9030-1. Epub 2008 Oct 24.

17.

The Ontology for Biomedical Investigations.

Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J.

PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016.

18.

Mapping between the OBO and OWL ontology languages.

Tirmizi SH, Aitken S, Moreira DA, Mungall C, Sequeda J, Shah NH, Miranker DP.

J Biomed Semantics. 2011 Mar 7;2 Suppl 1:S3. doi: 10.1186/2041-1480-2-S1-S3.

19.

SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.

Gessler DD, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT.

BMC Bioinformatics. 2009 Sep 23;10:309. doi: 10.1186/1471-2105-10-309.

20.

A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: the case of OBO disease ontologies.

Marquet G, Mosser J, Burgun A.

Int J Med Inform. 2007 Dec;76 Suppl 3:S353-61. Epub 2007 May 22.

PMID:
17517532
Items per page

Supplemental Content

Write to the Help Desk