Similar articles for PMID: 22731987

Year	Number of Results
2002	1
2003	1
2005	2
2008	1
2010	4
2011	10
2012	14
2013	9
2014	4
2015	10
2016	10
2017	14
2018	6
2019	9
2020	5
2021	4
2024	0

1

Toward almost closed genomes with GapFiller.

Boetzer M, Pirovano W. Boetzer M, et al. Genome Biol. 2012 Jun 25;13(6):R56. doi: 10.1186/gb-2012-13-6-r56. Genome Biol. 2012. PMID: 22731987 Free PMC article.

2

GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.

Chu C, Li X, Wu Y. Chu C, et al. BMC Genomics. 2019 Jun 6;20(Suppl 5):426. doi: 10.1186/s12864-019-5703-4. BMC Genomics. 2019. PMID: 31167639 Free PMC article.

3

GFinisher: a new strategy to refine and finish bacterial genome assemblies.

Guizelini D, Raittz RT, Cruz LM, Souza EM, Steffens MB, Pedrosa FO. Guizelini D, et al. Sci Rep. 2016 Oct 10;6:34963. doi: 10.1038/srep34963. Sci Rep. 2016. PMID: 27721396 Free PMC article.

4

GapFiller: a de novo assembly approach to fill the gap within paired reads.

Nadalin F, Vezzi F, Policriti A. Nadalin F, et al. BMC Bioinformatics. 2012;13 Suppl 14(Suppl 14):S8. doi: 10.1186/1471-2105-13-S14-S8. Epub 2012 Sep 7. BMC Bioinformatics. 2012. PMID: 23095524 Free PMC article.

5

Evaluation and Validation of Assembling Corrected PacBio Long Reads for Microbial Genome Completion via Hybrid Approaches.

Lin HH, Liao YC. Lin HH, et al. PLoS One. 2015 Dec 7;10(12):e0144305. doi: 10.1371/journal.pone.0144305. eCollection 2015. PLoS One. 2015. PMID: 26641475 Free PMC article.

6

FGAP: an automated gap closing tool.

Piro VC, Faoro H, Weiss VA, Steffens MB, Pedrosa FO, Souza EM, Raittz RT. Piro VC, et al. BMC Res Notes. 2014 Jun 18;7:371. doi: 10.1186/1756-0500-7-371. BMC Res Notes. 2014. PMID: 24938749 Free PMC article.

7

LR_Gapcloser: a tiling path-based gap closer that uses long reads to complete genome assembly.

Xu GC, Xu TJ, Zhu R, Zhang Y, Li SQ, Wang HW, Li JT. Xu GC, et al. Gigascience. 2019 Jan 1;8(1):giy157. doi: 10.1093/gigascience/giy157. Gigascience. 2019. PMID: 30576505 Free PMC article.

8

Sealer: a scalable gap-closing application for finishing draft genomes.

Paulino D, Warren RL, Vandervalk BP, Raymond A, Jackman SD, Birol I. Paulino D, et al. BMC Bioinformatics. 2015 Jul 25;16(1):230. doi: 10.1186/s12859-015-0663-4. BMC Bioinformatics. 2015. PMID: 26209068 Free PMC article.

9

Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.

Cherukuri Y, Janga SC. Cherukuri Y, et al. BMC Genomics. 2016 Aug 22;17 Suppl 7(Suppl 7):507. doi: 10.1186/s12864-016-2895-8. BMC Genomics. 2016. PMID: 27556636 Free PMC article.

10

Integrating genome assemblies with MAIA.

Nijkamp J, Winterbach W, van den Broek M, Daran JM, Reinders M, de Ridder D. Nijkamp J, et al. Bioinformatics. 2010 Sep 15;26(18):i433-9. doi: 10.1093/bioinformatics/btq366. Bioinformatics. 2010. PMID: 20823304 Free PMC article.

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