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Items: 1 to 20 of 124

1.

Extensive alternative polyadenylation during zebrafish development.

Ulitsky I, Shkumatava A, Jan CH, Subtelny AO, Koppstein D, Bell GW, Sive H, Bartel DP.

Genome Res. 2012 Oct;22(10):2054-66. doi: 10.1101/gr.139733.112. Epub 2012 Jun 21.

2.

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs.

Jan CH, Friedman RC, Ruby JG, Bartel DP.

Nature. 2011 Jan 6;469(7328):97-101. doi: 10.1038/nature09616. Epub 2010 Nov 17.

3.

Dynamic landscape of tandem 3' UTRs during zebrafish development.

Li Y, Sun Y, Fu Y, Li M, Huang G, Zhang C, Liang J, Huang S, Shen G, Yuan S, Chen L, Chen S, Xu A.

Genome Res. 2012 Oct;22(10):1899-906. doi: 10.1101/gr.128488.111. Epub 2012 Sep 5.

4.

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression.

Lianoglou S, Garg V, Yang JL, Leslie CS, Mayr C.

Genes Dev. 2013 Nov 1;27(21):2380-96. doi: 10.1101/gad.229328.113. Epub 2013 Oct 21.

5.

Global estimation of the 3' untranslated region landscape using RNA sequencing.

Kim M, You BH, Nam JW.

Methods. 2015 Jul 15;83:111-7. doi: 10.1016/j.ymeth.2015.04.011. Epub 2015 Apr 18.

PMID:
25899044
6.

Widespread and extensive lengthening of 3' UTRs in the mammalian brain.

Miura P, Shenker S, Andreu-Agullo C, Westholm JO, Lai EC.

Genome Res. 2013 May;23(5):812-25. doi: 10.1101/gr.146886.112. Epub 2013 Mar 21.

7.

Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation.

Shen Y, Ji G, Haas BJ, Wu X, Zheng J, Reese GJ, Li QQ.

Nucleic Acids Res. 2008 May;36(9):3150-61. doi: 10.1093/nar/gkn158. Epub 2008 Apr 13.

8.

Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.

Mishima Y, Giraldez AJ, Takeda Y, Fujiwara T, Sakamoto H, Schier AF, Inoue K.

Curr Biol. 2006 Nov 7;16(21):2135-42.

9.

Discovery, identification and sequence analysis of RNAs selected for very short or long poly A tail in immature bovine oocytes.

Gohin M, Fournier E, Dufort I, Sirard MA.

Mol Hum Reprod. 2014 Feb;20(2):127-38. doi: 10.1093/molehr/gat080. Epub 2013 Nov 13.

10.

Alternative cleavage and polyadenylation: extent, regulation and function.

Elkon R, Ugalde AP, Agami R.

Nat Rev Genet. 2013 Jul;14(7):496-506. doi: 10.1038/nrg3482. Review.

PMID:
23774734
11.

Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3'-end of genes.

Lee JY, Ji Z, Tian B.

Nucleic Acids Res. 2008 Oct;36(17):5581-90. doi: 10.1093/nar/gkn540. Epub 2008 Aug 30.

12.

Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3'-UTRs.

Kubo T, Wada T, Yamaguchi Y, Shimizu A, Handa H.

Nucleic Acids Res. 2006;34(21):6264-71. Epub 2006 Nov 10.

13.

Genome-wide mapping of polyadenylation sites in fission yeast reveals widespread alternative polyadenylation.

Mata J.

RNA Biol. 2013 Aug;10(8):1407-14. doi: 10.4161/rna.25758. Epub 2013 Jul 16.

14.

Autoregulation of GLD-2 cytoplasmic poly(A) polymerase.

Rouhana L, Wickens M.

RNA. 2007 Feb;13(2):188-99. Epub 2006 Dec 12.

15.

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Siegel TN, Hekstra DR, Wang X, Dewell S, Cross GA.

Nucleic Acids Res. 2010 Aug;38(15):4946-57. doi: 10.1093/nar/gkq237. Epub 2010 Apr 12.

16.

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.

Hafez D, Ni T, Mukherjee S, Zhu J, Ohler U.

Bioinformatics. 2013 Jul 1;29(13):i108-16. doi: 10.1093/bioinformatics/btt233.

17.

Dynamic expression of 3' UTRs revealed by Poisson hidden Markov modeling of RNA-Seq: implications in gene expression profiling.

Lu J, Bushel PR.

Gene. 2013 Sep 25;527(2):616-23. doi: 10.1016/j.gene.2013.06.052. Epub 2013 Jul 9.

18.

Transcriptional activity regulates alternative cleavage and polyadenylation.

Ji Z, Luo W, Li W, Hoque M, Pan Z, Zhao Y, Tian B.

Mol Syst Biol. 2011 Sep 27;7:534. doi: 10.1038/msb.2011.69.

19.

Genome-wide maps of polyadenylation reveal dynamic mRNA 3'-end formation in mammalian cell lineages.

Wang L, Dowell RD, Yi R.

RNA. 2013 Mar;19(3):413-25. doi: 10.1261/rna.035360.112. Epub 2013 Jan 16.

20.

E2F mediates enhanced alternative polyadenylation in proliferation.

Elkon R, Drost J, van Haaften G, Jenal M, Schrier M, Oude Vrielink JA, Agami R.

Genome Biol. 2012 Jul 2;13(7):R59. doi: 10.1186/gb-2012-13-7-r59.

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