Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 65

Similar articles for PubMed (Select 22721771)

1.

Quality of prokaryote genome assembly: indispensable issues of factors affecting prokaryote genome assembly quality.

Carneiro AR, Ramos RT, Barbosa HP, Schneider MP, Barh D, Azevedo V, Silva A.

Gene. 2012 Sep 1;505(2):365-7. doi: 10.1016/j.gene.2012.06.016. Epub 2012 Jun 18.

PMID:
22721771
2.

Tips and tricks for the assembly of a Corynebacterium pseudotuberculosis genome using a semiconductor sequencer.

Ramos RT, Carneiro AR, Soares Sde C, dos Santos AR, Almeida S, Guimarães L, Figueira F, Barbosa E, Tauch A, Azevedo V, Silva A.

Microb Biotechnol. 2013 Mar;6(2):150-6. doi: 10.1111/1751-7915.12006. Epub 2012 Dec 2.

3.

6-10× pyrosequencing is a practical approach for whole prokaryote genome studies.

Li J, Jiang J, Leung FC.

Gene. 2012 Feb 15;494(1):57-64. doi: 10.1016/j.gene.2011.11.051. Epub 2011 Dec 13.

PMID:
22192914
4.

Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study.

Cerdeira LT, Carneiro AR, Ramos RT, de Almeida SS, D'Afonseca V, Schneider MP, Baumbach J, Tauch A, McCulloch JA, Azevedo VA, Silva A.

J Microbiol Methods. 2011 Aug;86(2):218-23. doi: 10.1016/j.mimet.2011.05.008. Epub 2011 May 18.

5.

Graph accordance of next-generation sequence assemblies.

Yao G, Ye L, Gao H, Minx P, Warren WC, Weinstock GM.

Bioinformatics. 2012 Jan 1;28(1):13-6. doi: 10.1093/bioinformatics/btr588. Epub 2011 Oct 23.

6.

Construction and partial characterization of a Corynebacterium pseudotuberculosis bacterial artificial chromosome library through genomic survey sequencing.

Dorella FA, Fachin MS, Billault A, Dias Neto E, Soravito C, Oliveira SC, Meyer R, Miyoshi A, Azevedo V.

Genet Mol Res. 2006 Nov 30;5(4):653-63.

7.

Employing whole genome mapping for optimal de novo assembly of bacterial genomes.

Xavier BB, Sabirova J, Pieter M, Hernalsteens JP, de Greve H, Goossens H, Malhotra-Kumar S.

BMC Res Notes. 2014 Jul 30;7:484. doi: 10.1186/1756-0500-7-484.

8.

Optical mapping as a routine tool for bacterial genome sequence finishing.

Latreille P, Norton S, Goldman BS, Henkhaus J, Miller N, Barbazuk B, Bode HB, Darby C, Du Z, Forst S, Gaudriault S, Goodner B, Goodrich-Blair H, Slater S.

BMC Genomics. 2007 Sep 14;8:321.

9.

Projector: automatic contig mapping for gap closure purposes.

van Hijum SA, Zomer AL, Kuipers OP, Kok J.

Nucleic Acids Res. 2003 Nov 15;31(22):e144.

10.

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

Cahill MJ, Köser CU, Ross NE, Archer JA.

PLoS One. 2010 Jul 12;5(7):e11518. doi: 10.1371/journal.pone.0011518.

11.

Brazilian genome sequencing projects: state of the art.

Xavier ER, Capanema BP, Ruiz JC, Oliveira G, Meyer R, D'Afonseca V, Miyoshi A, Azevedo V.

Recent Pat DNA Gene Seq. 2008;2(2):111-32. Review.

PMID:
19075951
12.

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.

Mavromatis K, Land ML, Brettin TS, Quest DJ, Copeland A, Clum A, Goodwin L, Woyke T, Lapidus A, Klenk HP, Cottingham RW, Kyrpides NC.

PLoS One. 2012;7(12):e48837. doi: 10.1371/journal.pone.0048837. Epub 2012 Dec 12.

13.

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.

BMC Genomics. 2008 Dec 16;9:603. doi: 10.1186/1471-2164-9-603.

14.

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.

Ramos RT, Carneiro AR, de Castro Soares S, Barbosa S, Varuzza L, Orabona G, Tauch A, Azevedo V, Schneider MP, Silva A.

J Microbiol Methods. 2013 Dec;95(3):441-7. doi: 10.1016/j.mimet.2013.06.006. Epub 2013 Jun 21.

PMID:
23792707
15.

SEQuel: improving the accuracy of genome assemblies.

Ronen R, Boucher C, Chitsaz H, Pevzner P.

Bioinformatics. 2012 Jun 15;28(12):i188-96. doi: 10.1093/bioinformatics/bts219.

16.

PCR-assisted contig extension: stepwise strategy for bacterial genome closure.

Carraro DM, Camargo AA, Salim AC, Grivet M, Vasconcelos AT, Simpson AJ.

Biotechniques. 2003 Mar;34(3):626-8, 630-2.

PMID:
12661167
17.

Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.

Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, Barbazuk WB.

Science. 2013 Dec 20;342(6165):1516-7. doi: 10.1126/science.1241130.

PMID:
24357320
18.

Efficient and accurate whole genome assembly and methylome profiling of E. coli.

Powers JG, Weigman VJ, Shu J, Pufky JM, Cox D, Hurban P.

BMC Genomics. 2013 Oct 3;14:675. doi: 10.1186/1471-2164-14-675.

19.

Complete genome sequence of Corynebacterium pseudotuberculosis Cp31, isolated from an Egyptian buffalo.

Silva A, Ramos RT, Ribeiro Carneiro A, Cybelle Pinto A, de Castro Soares S, Rodrigues Santos A, Silva Almeida S, Guimarães LC, Figueira Aburjaile F, Vieira Barbosa EG, Alves Dorella F, Souza Rocha F, Souza Lopes T, Kawasaki R, Gomes Sá P, da Rocha Coimbra NA, Teixeira Cerdeira L, Silvanira Barbosa M, Cruz Schneider MP, Miyoshi A, Selim SA, Moawad MS, Azevedo V.

J Bacteriol. 2012 Dec;194(23):6663-4. doi: 10.1128/JB.01782-12.

20.

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.

Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS.

Nat Biotechnol. 2011 Sep 18;29(10):915-21. doi: 10.1038/nbt.1966.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk