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Results: 1 to 20 of 112

1.

A core human microbiome as viewed through 16S rRNA sequence clusters.

Huse SM, Ye Y, Zhou Y, Fodor AA.

PLoS One. 2012;7(6):e34242. doi: 10.1371/journal.pone.0034242. Epub 2012 Jun 13.

PMID:
22719824
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Bacterial biogeography of the human digestive tract.

Stearns JC, Lynch MD, Senadheera DB, Tenenbaum HC, Goldberg MB, Cvitkovitch DG, Croitoru K, Moreno-Hagelsieb G, Neufeld JD.

Sci Rep. 2011;1:170. doi: 10.1038/srep00170. Epub 2011 Nov 25.

PMID:
22355685
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analyses of the stability and core taxonomic memberships of the human microbiome.

Li K, Bihan M, Methé BA.

PLoS One. 2013 May 6;8(5):e63139. doi: 10.1371/journal.pone.0063139. Print 2013.

PMID:
23671663
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Species-level classification of the vaginal microbiome.

Fettweis JM, Serrano MG, Sheth NU, Mayer CM, Glascock AL, Brooks JP, Jefferson KK; Vaginal Microbiome Consortium (additional members), Buck GA.

BMC Genomics. 2012;13 Suppl 8:S17. doi: 10.1186/1471-2164-13-S8-S17. Epub 2012 Dec 17.

PMID:
23282177
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes.

Kim M, Morrison M, Yu Z.

J Microbiol Methods. 2011 Jan;84(1):81-7. doi: 10.1016/j.mimet.2010.10.020. Epub 2010 Oct 31.

PMID:
21047533
[PubMed - indexed for MEDLINE]
6.

Study of inter- and intra-individual variations in the salivary microbiota.

Lazarevic V, Whiteson K, Hernandez D, François P, Schrenzel J.

BMC Genomics. 2010 Sep 28;11:523. doi: 10.1186/1471-2164-11-523.

PMID:
20920195
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples.

Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, Gevers D, Huttenhower C, Izard J.

Genome Biol. 2012 Jun 14;13(6):R42. doi: 10.1186/gb-2012-13-6-r42.

PMID:
22698087
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison.

Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, Hayes RB.

PLoS One. 2011;6(7):e22788. doi: 10.1371/journal.pone.0022788. Epub 2011 Jul 29.

PMID:
21829515
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Defining the healthy "core microbiome" of oral microbial communities.

Zaura E, Keijser BJ, Huse SM, Crielaard W.

BMC Microbiol. 2009 Dec 15;9:259. doi: 10.1186/1471-2180-9-259.

PMID:
20003481
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A guide to enterotypes across the human body: meta-analysis of microbial community structures in human microbiome datasets.

Koren O, Knights D, Gonzalez A, Waldron L, Segata N, Knight R, Huttenhower C, Ley RE.

PLoS Comput Biol. 2013;9(1):e1002863. doi: 10.1371/journal.pcbi.1002863. Epub 2013 Jan 10.

PMID:
23326225
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.

Pinto AJ, Raskin L.

PLoS One. 2012;7(8):e43093. doi: 10.1371/journal.pone.0043093. Epub 2012 Aug 15.

PMID:
22905208
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis.

Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, Li C, Wei W, Liu J, Chen L, Davis C, Xu J.

BMC Oral Health. 2011 Dec 12;11:33. doi: 10.1186/1472-6831-11-33.

PMID:
22152152
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen.

Fouts DE, Szpakowski S, Purushe J, Torralba M, Waterman RC, MacNeil MD, Alexander LJ, Nelson KE.

PLoS One. 2012;7(11):e48289. doi: 10.1371/journal.pone.0048289. Epub 2012 Nov 7.

PMID:
23144861
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys.

Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, Elshahed MS.

Appl Environ Microbiol. 2009 Aug;75(16):5227-36. doi: 10.1128/AEM.00592-09. Epub 2009 Jun 26.

PMID:
19561178
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparative analysis of oral treponemes associated with periodontal health and disease.

You M, Mo S, Leung WK, Watt RM.

BMC Infect Dis. 2013 Apr 11;13:174. doi: 10.1186/1471-2334-13-174.

PMID:
23578286
[PubMed - in process]
Free PMC Article
16.

A metagenomic approach to characterization of the vaginal microbiome signature in pregnancy.

Aagaard K, Riehle K, Ma J, Segata N, Mistretta TA, Coarfa C, Raza S, Rosenbaum S, Van den Veyver I, Milosavljevic A, Gevers D, Huttenhower C, Petrosino J, Versalovic J.

PLoS One. 2012;7(6):e36466. doi: 10.1371/journal.pone.0036466. Epub 2012 Jun 13.

PMID:
22719832
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis.

Bogaert D, Keijser B, Huse S, Rossen J, Veenhoven R, van Gils E, Bruin J, Montijn R, Bonten M, Sanders E.

PLoS One. 2011 Feb 28;6(2):e17035. doi: 10.1371/journal.pone.0017035.

PMID:
21386965
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Saliva microbiomes distinguish caries-active from healthy human populations.

Yang F, Zeng X, Ning K, Liu KL, Lo CC, Wang W, Chen J, Wang D, Huang R, Chang X, Chain PS, Xie G, Ling J, Xu J.

ISME J. 2012 Jan;6(1):1-10. doi: 10.1038/ismej.2011.71. Epub 2011 Jun 30.

PMID:
21716312
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Long-term temporal analysis of the human fecal microbiota revealed a stable core of dominant bacterial species.

Martínez I, Muller CE, Walter J.

PLoS One. 2013 Jul 16;8(7):e69621. doi: 10.1371/journal.pone.0069621. Print 2013.

PMID:
23874976
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparison of the fecal microbiota of healthy horses and horses with colitis by high throughput sequencing of the V3-V5 region of the 16S rRNA gene.

Costa MC, Arroyo LG, Allen-Vercoe E, Stämpfli HR, Kim PT, Sturgeon A, Weese JS.

PLoS One. 2012;7(7):e41484. doi: 10.1371/journal.pone.0041484. Epub 2012 Jul 31.

PMID:
22859989
[PubMed - indexed for MEDLINE]
Free PMC Article

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