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Items: 1 to 20 of 107


MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models.

Wildenhain J, Fitzgerald N, Tyers M.

Bioinformatics. 2012 Aug 15;28(16):2200-1. doi: 10.1093/bioinformatics/bts349. Epub 2012 Jun 17.


Saint: a lightweight integration environment for model annotation.

Lister AL, Pocock M, Taschuk M, Wipat A.

Bioinformatics. 2009 Nov 15;25(22):3026-7. doi: 10.1093/bioinformatics/btp523. Epub 2009 Sep 4.


BioGRID REST Service, BiogridPlugin2 and BioGRID WebGraph: new tools for access to interaction data at BioGRID.

Winter AG, Wildenhain J, Tyers M.

Bioinformatics. 2011 Apr 1;27(7):1043-4. doi: 10.1093/bioinformatics/btr062. Epub 2011 Feb 7.


Data mining in bioinformatics using Weka.

Frank E, Hall M, Trigg L, Holmes G, Witten IH.

Bioinformatics. 2004 Oct 12;20(15):2479-81. Epub 2004 Apr 8.


A Java API for working with PubChem datasets.

Southern MR, Griffin PR.

Bioinformatics. 2011 Mar 1;27(5):741-2. doi: 10.1093/bioinformatics/btq715. Epub 2011 Jan 6.


Computational models for in-vitro anti-tubercular activity of molecules based on high-throughput chemical biology screening datasets.

Periwal V, Kishtapuram S; Open Source Drug Discovery Consortium, Scaria V.

BMC Pharmacol. 2012 Mar 31;12:1. doi: 10.1186/1471-2210-12-1.


Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule.

Mishra NK, Agarwal S, Raghava GP.

BMC Pharmacol. 2010 Jul 16;10:8. doi: 10.1186/1471-2210-10-8.


The Bioverse API and web application.

Guerquin M, McDermott J, Frazier Z, Samudrala R.

Methods Mol Biol. 2009;541:511-34. doi: 10.1007/978-1-59745-243-4_22. Review.


AMBIT RESTful web services: an implementation of the OpenTox application programming interface.

Jeliazkova N, Jeliazkov V.

J Cheminform. 2011 May 16;3:18. doi: 10.1186/1758-2946-3-18.


Ruffus: a lightweight Python library for computational pipelines.

Goodstadt L.

Bioinformatics. 2010 Nov 1;26(21):2778-9. doi: 10.1093/bioinformatics/btq524. Epub 2010 Sep 16.


The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.

Moreland JL, Gramada A, Buzko OV, Zhang Q, Bourne PE.

BMC Bioinformatics. 2005 Feb 6;6:21.


SylArray: a web server for automated detection of miRNA effects from expression data.

Bartonicek N, Enright AJ.

Bioinformatics. 2010 Nov 15;26(22):2900-1. doi: 10.1093/bioinformatics/btq545. Epub 2010 Sep 24.


An active registry for bioinformatics web services.

Pettifer S, Thorne D, McDermott P, Attwood T, Baran J, Bryne JC, Hupponen T, Mowbray D, Vriend G.

Bioinformatics. 2009 Aug 15;25(16):2090-1. doi: 10.1093/bioinformatics/btp329. Epub 2009 May 21.


myChEMBL: a virtual machine implementation of open data and cheminformatics tools.

Ochoa R, Davies M, Papadatos G, Atkinson F, Overington JP.

Bioinformatics. 2014 Jan 15;30(2):298-300. doi: 10.1093/bioinformatics/btt666. Epub 2013 Nov 20.


Integration of gel-based proteome data with pProRep.

Laukens K, Matthiesen R, Lemière F, Esmans E, Onckelen HV, Jensen ON, Witters E.

Bioinformatics. 2006 Nov 15;22(22):2838-40. Epub 2006 Oct 10.


QuickGO: a web-based tool for Gene Ontology searching.

Binns D, Dimmer E, Huntley R, Barrell D, O'Donovan C, Apweiler R.

Bioinformatics. 2009 Nov 15;25(22):3045-6. doi: 10.1093/bioinformatics/btp536. Epub 2009 Sep 10.


Epitopia: a web-server for predicting B-cell epitopes.

Rubinstein ND, Mayrose I, Martz E, Pupko T.

BMC Bioinformatics. 2009 Sep 14;10:287. doi: 10.1186/1471-2105-10-287.


Classifying and scoring of molecules with the NGN: new datasets, significance tests, and generalization.

Ma EY, Cameron CJ, Kremer SC.

BMC Bioinformatics. 2010 Oct 26;11 Suppl 8:S4. doi: 10.1186/1471-2105-11-S8-S4.


Genome Projector: zoomable genome map with multiple views.

Arakawa K, Tamaki S, Kono N, Kido N, Ikegami K, Ogawa R, Tomita M.

BMC Bioinformatics. 2009 Jan 23;10:31. doi: 10.1186/1471-2105-10-31.


METIS: multiple extraction techniques for informative sentences.

Mitchell AL, Divoli A, Kim JH, Hilario M, Selimas I, Attwood TK.

Bioinformatics. 2005 Nov 15;21(22):4196-7. Epub 2005 Sep 13.

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