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Results: 1 to 20 of 109

1.

Microbiology and proteomics, getting the best of both worlds!

Armengaud J.

Environ Microbiol. 2013 Jan;15(1):12-23. doi: 10.1111/j.1462-2920.2012.02811.x. Epub 2012 Jun 19. Review.

PMID:
22708953
[PubMed - indexed for MEDLINE]
2.

Proteogenomics for environmental microbiology.

Armengaud J, Hartmann EM, Bland C.

Proteomics. 2013 Oct;13(18-19):2731-42. doi: 10.1002/pmic.201200576. Epub 2013 Jun 18. Review.

PMID:
23636904
[PubMed - indexed for MEDLINE]
3.

Interpretation of shotgun proteomic data: the protein inference problem.

Nesvizhskii AI, Aebersold R.

Mol Cell Proteomics. 2005 Oct;4(10):1419-40. Epub 2005 Jul 11.

PMID:
16009968
[PubMed - indexed for MEDLINE]
Free Article
4.

Non-model organisms, a species endangered by proteogenomics.

Armengaud J, Trapp J, Pible O, Geffard O, Chaumot A, Hartmann EM.

J Proteomics. 2014 Jun 13;105:5-18. doi: 10.1016/j.jprot.2014.01.007. Epub 2014 Jan 16.

PMID:
24440519
[PubMed - in process]
5.

Proteogenomic approaches for the molecular characterization of natural microbial communities.

Banfield JF, Verberkmoes NC, Hettich RL, Thelen MP.

OMICS. 2005 Winter;9(4):301-33.

PMID:
16402891
[PubMed - indexed for MEDLINE]
6.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
[PubMed - indexed for MEDLINE]
7.

Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.

Christie-Oleza JA, Piña-Villalonga JM, Guerin P, Miotello G, Bosch R, Nogales B, Armengaud J.

Environ Microbiol. 2013 Jan;15(1):133-47. doi: 10.1111/j.1462-2920.2012.02812.x. Epub 2012 Jun 19.

PMID:
22712501
[PubMed - indexed for MEDLINE]
8.

Proteomics: bases for protein complexity understanding.

Rotilio D, Della Corte A, D'Imperio M, Coletta W, Marcone S, Silvestri C, Giordano L, Di Michele M, Donati MB.

Thromb Res. 2012 Mar;129(3):257-62. doi: 10.1016/j.thromres.2011.12.035. Epub 2012 Jan 26. Review.

PMID:
22283976
[PubMed - indexed for MEDLINE]
9.

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches.

Logares R, Haverkamp TH, Kumar S, Lanzén A, Nederbragt AJ, Quince C, Kauserud H.

J Microbiol Methods. 2012 Oct;91(1):106-13. doi: 10.1016/j.mimet.2012.07.017. Epub 2012 Jul 28. Review.

PMID:
22849829
[PubMed - indexed for MEDLINE]
10.

Exoproteomics: exploring the world around biological systems.

Armengaud J, Christie-Oleza JA, Clair G, Malard V, Duport C.

Expert Rev Proteomics. 2012 Oct;9(5):561-75. doi: 10.1586/epr.12.52. Review.

PMID:
23194272
[PubMed - indexed for MEDLINE]
11.

Systems biology: Functional analysis of natural microbial consortia using community proteomics.

VerBerkmoes NC, Denef VJ, Hettich RL, Banfield JF.

Nat Rev Microbiol. 2009 Mar;7(3):196-205. doi: 10.1038/nrmicro2080. Review.

PMID:
19219053
[PubMed - indexed for MEDLINE]
12.

Quantify this! Report on a round table discussion on quantitative mass spectrometry in proteomics.

Quadroni M, Ducret A, Stöcklin R.

Proteomics. 2004 Aug;4(8):2211-5.

PMID:
15274113
[PubMed - indexed for MEDLINE]
13.

Proteomic tools for environmental microbiology--a roadmap from sample preparation to protein identification and quantification.

Wöhlbrand L, Trautwein K, Rabus R.

Proteomics. 2013 Oct;13(18-19):2700-30. doi: 10.1002/pmic.201300175. Review.

PMID:
23894077
[PubMed - indexed for MEDLINE]
14.

Quantitative proteomics of complex mixtures.

Coombs KM.

Expert Rev Proteomics. 2011 Oct;8(5):659-77. doi: 10.1586/epr.11.55. Review.

PMID:
21999835
[PubMed - indexed for MEDLINE]
15.

Elective affinities--bioinformatic analysis of proteomic mass spectrometry data.

Li X, Pizarro A, Grosser T.

Arch Physiol Biochem. 2009 Dec;115(5):311-9. doi: 10.3109/13813450903390039. Review.

PMID:
19911947
[PubMed - indexed for MEDLINE]
16.

New Tricks for an Old Dog: Proteomics of the PSD.

Jordan BA, Fernholz BD, Neubert TA, Ziff EB.

In: Kittler JT, Moss SJ, editors. The Dynamic Synapse: Molecular Methods in Ionotropic Receptor Biology. Boca Raton (FL): CRC Press; 2006. Chapter 3.

PMID:
21204470
[PubMed]
Books & Documents
17.

Environmental proteomics: applications of proteome profiling in environmental microbiology and biotechnology.

Lacerda CM, Reardon KF.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):75-87. doi: 10.1093/bfgp/elp005. Epub 2009 Mar 11. Review.

PMID:
19279070
[PubMed - indexed for MEDLINE]
Free Article
18.

Technical advances in proteomics mass spectrometry: identification of post-translational modifications.

Amoresano A, Carpentieri A, Giangrande C, Palmese A, Chiappetta G, Marino G, Pucci P.

Clin Chem Lab Med. 2009;47(6):647-65. doi: 10.1515/CCLM.2009.154. Review.

PMID:
19426139
[PubMed - indexed for MEDLINE]
19.

Tools and challenges for diversity-driven proteomics in Brazil.

Junqueira M, Carvalho PC.

Proteomics. 2012 Aug;12(17):2601-6. doi: 10.1002/pmic.201200058. Epub 2012 Jul 30. Review.

PMID:
22744956
[PubMed - indexed for MEDLINE]
20.

Approaching clinical proteomics: current state and future fields of application in cellular proteomics.

Apweiler R, Aslanidis C, Deufel T, Gerstner A, Hansen J, Hochstrasser D, Kellner R, Kubicek M, Lottspeich F, Maser E, Mewes HW, Meyer HE, Müllner S, Mutter W, Neumaier M, Nollau P, Nothwang HG, Ponten F, Radbruch A, Reinert K, Rothe G, Stockinger H, Tárnok A, Taussig MJ, Thiel A, Thiery J, Ueffing M, Valet G, Vandekerckhove J, Wagener C, Wagner O, Schmitz G.

Cytometry A. 2009 Oct;75(10):816-32. doi: 10.1002/cyto.a.20779. Review.

PMID:
19739086
[PubMed - indexed for MEDLINE]
Free Article

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