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Results: 1 to 20 of 110

Similar articles for PubMed (Select 22693222)

1.

BioMe: biologically relevant metals.

Tus A, Rakipovic A, Peretin G, Tomic S, Sikic M.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W352-7. doi: 10.1093/nar/gks514. Epub 2012 Jun 12.

2.

MeRNA: a database of metal ion binding sites in RNA structures.

Stefan LR, Zhang R, Levitan AG, Hendrix DK, Brenner SE, Holbrook SR.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D131-4.

3.

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination.

Dokmanić I, Sikić M, Tomić S.

Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):257-63. doi: 10.1107/S090744490706595X. Epub 2008 Feb 20.

PMID:
18323620
4.

MDB: the Metalloprotein Database and Browser at The Scripps Research Institute.

Castagnetto JM, Hennessy SW, Roberts VA, Getzoff ED, Tainer JA, Pique ME.

Nucleic Acids Res. 2002 Jan 1;30(1):379-82.

5.

Modeling of metal interaction geometries for protein-ligand docking.

Seebeck B, Reulecke I, Kämper A, Rarey M.

Proteins. 2008 May 15;71(3):1237-54.

PMID:
18041759
6.
7.

MetalDetector v2.0: predicting the geometry of metal binding sites from protein sequence.

Passerini A, Lippi M, Frasconi P.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W288-92. doi: 10.1093/nar/gkr365. Epub 2011 May 16.

8.

First-second shell interactions in metal binding sites in proteins: a PDB survey and DFT/CDM calculations.

Dudev T, Lin YL, Dudev M, Lim C.

J Am Chem Soc. 2003 Mar 12;125(10):3168-80.

PMID:
12617685
9.
10.

MINAS--a database of Metal Ions in Nucleic AcidS.

Schnabl J, Suter P, Sigel RK.

Nucleic Acids Res. 2012 Jan;40(Database issue):D434-8. doi: 10.1093/nar/gkr920. Epub 2011 Nov 16.

11.

Metals in biomass: from the biological system of elements to reasons of fractionation and element use.

Fränzle S, Markert B.

Environ Sci Pollut Res Int. 2007 Sep;14(6):404-13.

PMID:
17993224
12.

MetalPDB: a database of metal sites in biological macromolecular structures.

Andreini C, Cavallaro G, Lorenzini S, Rosato A.

Nucleic Acids Res. 2013 Jan;41(Database issue):D312-9. doi: 10.1093/nar/gks1063. Epub 2012 Nov 15.

13.

Using diastereopeptides to control metal ion coordination in proteins.

Peacock AF, Hemmingsen L, Pecoraro VL.

Proc Natl Acad Sci U S A. 2008 Oct 28;105(43):16566-71. doi: 10.1073/pnas.0806792105. Epub 2008 Oct 21.

14.

Response of a designed metalloprotein to changes in metal ion coordination, exogenous ligands, and active site volume determined by X-ray crystallography.

Geremia S, Di Costanzo L, Randaccio L, Engel DE, Lombardi A, Nastri F, DeGrado WF.

J Am Chem Soc. 2005 Dec 14;127(49):17266-76.

PMID:
16332076
15.
16.

The geometry of metal-ligand interactions relevant to proteins.

Harding MM.

Acta Crystallogr D Biol Crystallogr. 1999 Aug;55(Pt 8):1432-43.

PMID:
10417412
17.

Prediction of metal ion-binding sites in proteins using the fragment transformation method.

Lu CH, Lin YF, Lin JJ, Yu CS.

PLoS One. 2012;7(6):e39252. doi: 10.1371/journal.pone.0039252. Epub 2012 Jun 18.

18.

NPIDB: Nucleic acid-Protein Interaction DataBase.

Kirsanov DD, Zanegina ON, Aksianov EA, Spirin SA, Karyagina AS, Alexeevski AV.

Nucleic Acids Res. 2013 Jan;41(Database issue):D517-23. doi: 10.1093/nar/gks1199. Epub 2012 Nov 27.

19.

MetalionRNA: computational predictor of metal-binding sites in RNA structures.

Philips A, Milanowska K, Lach G, Boniecki M, Rother K, Bujnicki JM.

Bioinformatics. 2012 Jan 15;28(2):198-205. doi: 10.1093/bioinformatics/btr636. Epub 2011 Nov 21.

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