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Items: 1 to 20 of 105

1.

Hierarchical modularity and the evolution of genetic interactomes across species.

Ryan CJ, Roguev A, Patrick K, Xu J, Jahari H, Tong Z, Beltrao P, Shales M, Qu H, Collins SR, Kliegman JI, Jiang L, Kuo D, Tosti E, Kim HS, Edelmann W, Keogh MC, Greene D, Tang C, Cunningham P, Shokat KM, Cagney G, Svensson JP, Guthrie C, Espenshade PJ, Ideker T, Krogan NJ.

Mol Cell. 2012 Jun 8;46(5):691-704. doi: 10.1016/j.molcel.2012.05.028.

2.

Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast.

Roguev A, Bandyopadhyay S, Zofall M, Zhang K, Fischer T, Collins SR, Qu H, Shales M, Park HO, Hayles J, Hoe KL, Kim DU, Ideker T, Grewal SI, Weissman JS, Krogan NJ.

Science. 2008 Oct 17;322(5900):405-10. doi: 10.1126/science.1162609. Epub 2008 Sep 25.

3.

Conserved rules govern genetic interaction degree across species.

Koch EN, Costanzo M, Bellay J, Deshpande R, Chatfield-Reed K, Chua G, D'Urso G, Andrews BJ, Boone C, Myers CL.

Genome Biol. 2012 Jul 2;13(7):R57. doi: 10.1186/gb-2012-13-7-r57.

4.

Evolution of phosphoregulation: comparison of phosphorylation patterns across yeast species.

Beltrao P, Trinidad JC, Fiedler D, Roguev A, Lim WA, Shokat KM, Burlingame AL, Krogan NJ.

PLoS Biol. 2009 Jun 16;7(6):e1000134. doi: 10.1371/journal.pbio.1000134. Epub 2009 Jun 23. Erratum in: PLoS Biol. 2009 Nov;7(11). doi: 10.1371/annotation/66479889-5e57-4213-bf25-c4e8cf3d933b.

5.

Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, Yoo HS, Duhig T, Nam M, Palmer G, Han S, Jeffery L, Baek ST, Lee H, Shim YS, Lee M, Kim L, Heo KS, Noh EJ, Lee AR, Jang YJ, Chung KS, Choi SJ, Park JY, Park Y, Kim HM, Park SK, Park HJ, Kang EJ, Kim HB, Kang HS, Park HM, Kim K, Song K, Song KB, Nurse P, Hoe KL.

Nat Biotechnol. 2010 Jun;28(6):617-23. doi: 10.1038/nbt.1628. Epub 2010 May 16. Erratum in: Nat Biotechnol. 2010 Dec;28(12):1308.

6.
7.

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast.

Tanay A, Regev A, Shamir R.

Proc Natl Acad Sci U S A. 2005 May 17;102(20):7203-8. Epub 2005 May 9.

8.

High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe.

Roguev A, Wiren M, Weissman JS, Krogan NJ.

Nat Methods. 2007 Oct;4(10):861-6. Epub 2007 Sep 23.

PMID:
17893680
9.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C.

Methods Enzymol. 2010;470:145-79. doi: 10.1016/S0076-6879(10)70007-0. Epub 2010 Mar 1.

PMID:
20946810
10.

Comparative analysis of regulatory transcription factors in Schizosaccharomyces pombe and budding yeasts.

Beskow A, Wright AP.

Yeast. 2006 Oct 15;23(13):929-35. Erratum in: Yeast. 2006 Dec;23(16):1173.

11.

All or nothing: protein complexes flip essentiality between distantly related eukaryotes.

Ryan CJ, Krogan NJ, Cunningham P, Cagney G.

Genome Biol Evol. 2013;5(6):1049-59. doi: 10.1093/gbe/evt074.

12.

Functionally homologous DNA replication genes in fission and budding yeast.

Sánchez M, Calzada A, Bueno A.

J Cell Sci. 1999 Jul;112 ( Pt 14):2381-90.

13.

Functional repurposing revealed by comparing S. pombe and S. cerevisiae genetic interactions.

Frost A, Elgort MG, Brandman O, Ives C, Collins SR, Miller-Vedam L, Weibezahn J, Hein MY, Poser I, Mann M, Hyman AA, Weissman JS.

Cell. 2012 Jun 8;149(6):1339-52. doi: 10.1016/j.cell.2012.04.028.

15.

Functional conservation and cell cycle localization of the Nhp2 core component of H + ACA snoRNPs in fission and budding yeasts.

Maiorano D, Brimage LJ, Leroy D, Kearsey SE.

Exp Cell Res. 1999 Oct 10;252(1):165-74.

PMID:
10502409
16.

Parallel evolution by gene duplication in the genomes of two unicellular fungi.

Hughes AL, Friedman R.

Genome Res. 2003 Jun;13(6A):1259-64.

17.

Parallel evolution by gene duplication in the genomes of two unicellular fungi.

Hughes AL, Friedman R.

Genome Res. 2003 May;13(5):794-9. Corrected and republished in: Genome Res. 2003 Jun;13(6A):1259-64.

18.
20.

Cross-species chemogenomic profiling reveals evolutionarily conserved drug mode of action.

Kapitzky L, Beltrao P, Berens TJ, Gassner N, Zhou C, Wüster A, Wu J, Babu MM, Elledge SJ, Toczyski D, Lokey RS, Krogan NJ.

Mol Syst Biol. 2010 Dec 21;6:451. doi: 10.1038/msb.2010.107.

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