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Results: 1 to 20 of 87

1.

MSQuant: a platform for stable isotope-based quantitative proteomics.

Gouw JW, Krijgsveld J.

Methods Mol Biol. 2012;893:511-22. doi: 10.1007/978-1-61779-885-6_31.

PMID:
22665320
[PubMed - indexed for MEDLINE]
2.

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.

Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M.

J Proteome Res. 2010 Jan;9(1):393-403. doi: 10.1021/pr900721e.

PMID:
19888749
[PubMed - indexed for MEDLINE]
3.

In vivo quantitative proteome profiling: planning and evaluation of SILAC experiments.

Kirchner M, Selbach M.

Methods Mol Biol. 2012;893:175-99. doi: 10.1007/978-1-61779-885-6_13.

PMID:
22665302
[PubMed - indexed for MEDLINE]
4.

ProtQuant: a tool for the label-free quantification of MudPIT proteomics data.

Bridges SM, Magee GB, Wang N, Williams WP, Burgess SC, Nanduri B.

BMC Bioinformatics. 2007 Nov 1;8 Suppl 7:S24.

PMID:
18047724
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

ICPL labeling strategies for proteome research.

Lottspeich F, Kellermann J.

Methods Mol Biol. 2011;753:55-64. doi: 10.1007/978-1-61779-148-2_4.

PMID:
21604115
[PubMed - indexed for MEDLINE]
6.

A data processing pipeline for mammalian proteome dynamics studies using stable isotope metabolic labeling.

Guan S, Price JC, Prusiner SB, Ghaemmaghami S, Burlingame AL.

Mol Cell Proteomics. 2011 Dec;10(12):M111.010728. doi: 10.1074/mcp.M111.010728. Epub 2011 Sep 21.

PMID:
21937731
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C.

J Proteome Res. 2012 Mar 2;11(3):1582-90. doi: 10.1021/pr200748h. Epub 2012 Feb 16.

PMID:
22188275
[PubMed - indexed for MEDLINE]
8.

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.

Wong JW, Sullivan MJ, Cagney G.

Brief Bioinform. 2008 Mar;9(2):156-65. Epub 2007 Sep 28. Review.

PMID:
17905794
[PubMed - indexed for MEDLINE]
Free Article
9.

Census for proteome quantification.

Park SK, Yates JR 3rd.

Curr Protoc Bioinformatics. 2010 Mar;Chapter 13:Unit 13.12.1-11. doi: 10.1002/0471250953.bi1312s29.

PMID:
20205189
[PubMed - indexed for MEDLINE]
10.

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.

BouyssiƩ D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.

Mol Cell Proteomics. 2007 Sep;6(9):1621-37. Epub 2007 May 28.

PMID:
17533220
[PubMed - indexed for MEDLINE]
Free Article
11.

Advances in quantitative proteomics via stable isotope tagging and mass spectrometry.

Tao WA, Aebersold R.

Curr Opin Biotechnol. 2003 Feb;14(1):110-8. Review.

PMID:
12566010
[PubMed - indexed for MEDLINE]
12.

Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics.

Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC.

Anal Chem. 2010 Oct 15;82(20):8696-702. doi: 10.1021/ac101978b.

PMID:
20845935
[PubMed - indexed for MEDLINE]
13.

Find pairs: the module for protein quantification of the PeakQuant software suite.

Eisenacher M, Kohl M, Wiese S, Hebeler R, Meyer HE, Warscheid B, Stephan C.

OMICS. 2012 Sep;16(9):457-67. doi: 10.1089/omi.2011.0140. Epub 2012 Aug 21.

PMID:
22909347
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Isotope-coded protein label.

Kellermann J, Lottspeich F.

Methods Mol Biol. 2012;893:143-53. doi: 10.1007/978-1-61779-885-6_11.

PMID:
22665300
[PubMed - indexed for MEDLINE]
15.

Applications of stable isotope dimethyl labeling in quantitative proteomics.

Kovanich D, Cappadona S, Raijmakers R, Mohammed S, Scholten A, Heck AJ.

Anal Bioanal Chem. 2012 Sep;404(4):991-1009. doi: 10.1007/s00216-012-6070-z. Epub 2012 May 27. Review.

PMID:
22644145
[PubMed - indexed for MEDLINE]
16.

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.

Mueller LN, Brusniak MY, Mani DR, Aebersold R.

J Proteome Res. 2008 Jan;7(1):51-61. doi: 10.1021/pr700758r. Epub 2008 Jan 4. Review.

PMID:
18173218
[PubMed - indexed for MEDLINE]
17.
18.

Computational analysis of quantitative proteomics data using stable isotope labeling.

MacCoss MJ, Wu CC.

Methods Mol Biol. 2007;359:177-89.

PMID:
17484118
[PubMed - indexed for MEDLINE]
19.

Label-free quantitative proteomics trends for protein-protein interactions.

Tate S, Larsen B, Bonner R, Gingras AC.

J Proteomics. 2013 Apr 9;81:91-101. doi: 10.1016/j.jprot.2012.10.027. Epub 2012 Nov 12. Review.

PMID:
23153790
[PubMed - indexed for MEDLINE]
Free Article
20.

ICPL--isotope-coded protein label.

Kellermann J.

Methods Mol Biol. 2008;424:113-23. doi: 10.1007/978-1-60327-064-9_10.

PMID:
18369857
[PubMed - indexed for MEDLINE]
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