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MicroRNA-mediated regulation of gene expression is affected by disease-associated SNPs within the 3'-UTR via altered RNA structure.

Haas U, Sczakiel G, Laufer SD.

RNA Biol. 2012 Jun;9(6):924-37. doi: 10.4161/rna.20497. Epub 2012 Jun 1.


Human microRNA-155 on chromosome 21 differentially interacts with its polymorphic target in the AGTR1 3' untranslated region: a mechanism for functional single-nucleotide polymorphisms related to phenotypes.

Sethupathy P, Borel C, Gagnebin M, Grant GR, Deutsch S, Elton TS, Hatzigeorgiou AG, Antonarakis SE.

Am J Hum Genet. 2007 Aug;81(2):405-13. Epub 2007 Jul 12.


Aberrant allele frequencies of the SNPs located in microRNA target sites are potentially associated with human cancers.

Yu Z, Li Z, Jolicoeur N, Zhang L, Fortin Y, Wang E, Wu M, Shen SH.

Nucleic Acids Res. 2007;35(13):4535-41. Epub 2007 Jun 21.


Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility.

Nicoloso MS, Sun H, Spizzo R, Kim H, Wickramasinghe P, Shimizu M, Wojcik SE, Ferdin J, Kunej T, Xiao L, Manoukian S, Secreto G, Ravagnani F, Wang X, Radice P, Croce CM, Davuluri RV, Calin GA.

Cancer Res. 2010 Apr 1;70(7):2789-98. doi: 10.1158/0008-5472.CAN-09-3541. Epub 2010 Mar 23.


miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines.

Zhang W, Edwards A, Zhu D, Flemington EK, Deininger P, Zhang K.

PLoS One. 2012;7(2):e31429. doi: 10.1371/journal.pone.0031429. Epub 2012 Feb 14.


Identification of common carp (Cyprinus carpio) microRNAs and microRNA-related SNPs.

Zhu YP, Xue W, Wang JT, Wan YM, Wang SL, Xu P, Zhang Y, Li JT, Sun XW.

BMC Genomics. 2012 Aug 21;13:413. doi: 10.1186/1471-2164-13-413.


Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis.

Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY.

Hum Mutat. 2012 Jan;33(1):254-63. doi: 10.1002/humu.21641. Epub 2011 Nov 23.


Cis-acting polymorphisms affect complex traits through modifications of microRNA regulation pathways.

Arnold M, Ellwanger DC, Hartsperger ML, Pfeufer A, Stümpflen V.

PLoS One. 2012;7(5):e36694. doi: 10.1371/journal.pone.0036694. Epub 2012 May 11.


In silico analysis of microRNAS targeting the HLA-G 3' untranslated region alleles and haplotypes.

Castelli EC, Moreau P, Oya e Chiromatzo A, Mendes-Junior CT, Veiga-Castelli LC, Yaghi L, Giuliatti S, Carosella ED, Donadi EA.

Hum Immunol. 2009 Dec;70(12):1020-5. doi: 10.1016/j.humimm.2009.07.028. Epub 2009 Aug 5.


Identification of fifteen novel germline variants in the BRCA1 3'UTR reveals a variant in a breast cancer case that introduces a functional miR-103 target site.

Brewster BL, Rossiello F, French JD, Edwards SL, Wong M, Wronski A, Whiley P, Waddell N, Chen X, Bove B; kConFab, Hopper JL, John EM, Andrulis I, Daly M, Volorio S, Bernard L, Peissel B, Manoukian S, Barile M, Pizzamiglio S, Verderio P, Spurdle AB, Radice P, Godwin AK, Southey MC, Brown MA, Peterlongo P.

Hum Mutat. 2012 Dec;33(12):1665-75. doi: 10.1002/humu.22159. Epub 2012 Aug 2.


A microRNA-7 binding site polymorphism in HOXB5 leads to differential gene expression in bladder cancer.

Luo J, Cai Q, Wang W, Huang H, Zeng H, He W, Deng W, Yu H, Chan E, Ng CF, Huang J, Lin T.

PLoS One. 2012;7(6):e40127. doi: 10.1371/journal.pone.0040127. Epub 2012 Jun 29.


Identification of splice variants, targeted microRNAs and functional single nucleotide polymorphisms of the BOLA-DQA2 gene in dairy cattle.

Hou Q, Huang J, Ju Z, Li Q, Li L, Wang C, Sun T, Wang L, Hou M, Hang S, Zhong J.

DNA Cell Biol. 2012 May;31(5):739-44. doi: 10.1089/dna.2011.1402. Epub 2011 Nov 15.


Genetic variation in an miRNA-1827 binding site in MYCL1 alters susceptibility to small-cell lung cancer.

Xiong F, Wu C, Chang J, Yu D, Xu B, Yuan P, Zhai K, Xu J, Tan W, Lin D.

Cancer Res. 2011 Aug 1;71(15):5175-81. doi: 10.1158/0008-5472.CAN-10-4407. Epub 2011 Jun 15.


MicroRNA-155 regulates human angiotensin II type 1 receptor expression in fibroblasts.

Martin MM, Lee EJ, Buckenberger JA, Schmittgen TD, Elton TS.

J Biol Chem. 2006 Jul 7;281(27):18277-84. Epub 2006 May 4. Retraction in: J Biol Chem. 2013 Feb 8;288(6):4226.


New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites.

Lee I, Ajay SS, Yook JI, Kim HS, Hong SH, Kim NH, Dhanasekaran SM, Chinnaiyan AM, Athey BD.

Genome Res. 2009 Jul;19(7):1175-83. doi: 10.1101/gr.089367.108. Epub 2009 Mar 31.


Single nucleotide polymorphism-specific regulation of matrix metalloproteinase-9 by multiple miRNAs targeting the coding exon.

Duellman T, Warren C, Yang J.

Nucleic Acids Res. 2014 May;42(9):5518-31. doi: 10.1093/nar/gku197. Epub 2014 Mar 13.


An NTD-associated polymorphism in the 3' UTR of MTHFD1L can affect disease risk by altering miRNA binding.

Minguzzi S, Selcuklu SD, Spillane C, Parle-McDermott A.

Hum Mutat. 2014 Jan;35(1):96-104. doi: 10.1002/humu.22459.


C-T variant in a miRNA target site of BCL2 is associated with increased risk of human papilloma virus related cervical cancer--an in silico approach.

Reshmi G, Surya R, Jissa VT, Babu PS, Preethi NR, Santhi WS, Jayaprakash PG, Pillai MR.

Genomics. 2011 Sep;98(3):189-93. doi: 10.1016/j.ygeno.2011.06.005. Epub 2011 Jun 17.


MiR-196a binding-site SNP regulates RAP1A expression contributing to esophageal squamous cell carcinoma risk and metastasis.

Wang K, Li J, Guo H, Xu X, Xiong G, Guan X, Liu B, Li J, Chen X, Yang K, Bai Y.

Carcinogenesis. 2012 Nov;33(11):2147-54. doi: 10.1093/carcin/bgs259. Epub 2012 Aug 1.

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