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Results: 1 to 20 of 66

1.

Reducing ligation bias of small RNAs in libraries for next generation sequencing.

Sorefan K, Pais H, Hall AE, Kozomara A, Griffiths-Jones S, Moulton V, Dalmay T.

Silence. 2012 May 30;3(1):4. doi: 10.1186/1758-907X-3-4.

PMID:
22647250
[PubMed]
Free PMC Article
2.

Structural bias in T4 RNA ligase-mediated 3'-adapter ligation.

Zhuang F, Fuchs RT, Sun Z, Zheng Y, Robb GB.

Nucleic Acids Res. 2012 Apr;40(7):e54. doi: 10.1093/nar/gkr1263. Epub 2012 Jan 12.

PMID:
22241775
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Small RNA library preparation for next-generation sequencing by single ligation, extension and circularization technology.

Kwon YS.

Biotechnol Lett. 2011 Aug;33(8):1633-41. doi: 10.1007/s10529-011-0611-y. Epub 2011 Apr 9.

PMID:
21479628
[PubMed - indexed for MEDLINE]
4.

Generation of plant small RNA cDNA libraries for high-throughput sequencing.

Zhu QH, Helliwell CA.

Methods Mol Biol. 2012;894:123-37. doi: 10.1007/978-1-61779-882-5_9.

PMID:
22678577
[PubMed - indexed for MEDLINE]
5.

Library preparation methods for next-generation sequencing: tone down the bias.

van Dijk EL, Jaszczyszyn Y, Thermes C.

Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15. Review.

PMID:
24440557
[PubMed - indexed for MEDLINE]
6.

Computational analysis of small RNA cloning data.

Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M.

Methods. 2008 Jan;44(1):13-21. Review.

PMID:
18158128
[PubMed - indexed for MEDLINE]
7.

Evaluating bias-reducing protocols for RNA sequencing library preparation.

Jackson TJ, Spriggs RV, Burgoyne NJ, Jones C, Willis AE.

BMC Genomics. 2014 Jul 7;15(1):569. [Epub ahead of print]

PMID:
25001197
[PubMed - as supplied by publisher]
Free Article
8.

Identification of microRNAs and natural antisense transcript-originated endogenous siRNAs from small-RNA deep sequencing data.

Zhang W, Zhou X, Xia J, Zhou X.

Methods Mol Biol. 2012;883:221-7. doi: 10.1007/978-1-61779-839-9_17.

PMID:
22589137
[PubMed - indexed for MEDLINE]
9.

Next-generation sequencing of miRNAs with Roche 454 GS-FLX technology: steps for a successful application.

Soares AR, Pereira PM, Santos MA.

Methods Mol Biol. 2012;822:189-204. doi: 10.1007/978-1-61779-427-8_13.

PMID:
22144200
[PubMed - indexed for MEDLINE]
10.

A bias-reducing strategy in profiling small RNAs using Solexa.

Sun G, Wu X, Wang J, Li H, Li X, Gao H, Rossi J, Yen Y.

RNA. 2011 Dec;17(12):2256-62. doi: 10.1261/rna.028621.111. Epub 2011 Oct 20.

PMID:
22016383
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Deep-sequencing protocols influence the results obtained in small-RNA sequencing.

Toedling J, Servant N, Ciaudo C, Farinelli L, Voinnet O, Heard E, Barillot E.

PLoS One. 2012;7(2):e32724. doi: 10.1371/journal.pone.0032724. Epub 2012 Feb 27.

PMID:
22384282
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Computer-assisted annotation of murine Sertoli cell small RNA transcriptome.

Ortogero N, Hennig GW, Langille C, Ro S, McCarrey JR, Yan W.

Biol Reprod. 2013 Jan 3;88(1):3. doi: 10.1095/biolreprod.112.102269. Print 2013 Jan.

PMID:
23136297
[PubMed - indexed for MEDLINE]
Free Article
13.

Construction of small RNA cDNA libraries for deep sequencing.

Lu C, Meyers BC, Green PJ.

Methods. 2007 Oct;43(2):110-7.

PMID:
17889797
[PubMed - indexed for MEDLINE]
14.

Mammalian miRNA curation through next-generation sequencing.

Brown M, Suryawanshi H, Hafner M, Farazi TA, Tuschl T.

Front Genet. 2013 Aug 2;4:145. doi: 10.3389/fgene.2013.00145. eCollection 2013.

PMID:
23935604
[PubMed]
Free PMC Article
15.

Detection of small RNAs and microRNAs using deep sequencing technology.

Havecker ER.

Methods Mol Biol. 2011;732:55-68. doi: 10.1007/978-1-61779-083-6_5.

PMID:
21431705
[PubMed - indexed for MEDLINE]
16.

Methods for small RNA preparation for digital gene expression profiling by next-generation sequencing.

Linsen SE, Cuppen E.

Methods Mol Biol. 2012;822:205-17. doi: 10.1007/978-1-61779-427-8_14.

PMID:
22144201
[PubMed - indexed for MEDLINE]
17.

DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.

Yang JH, Qu LH.

Methods Mol Biol. 2012;822:233-48. doi: 10.1007/978-1-61779-427-8_16.

PMID:
22144203
[PubMed - indexed for MEDLINE]
18.

mirExplorer: detecting microRNAs from genome and next generation sequencing data using the AdaBoost method with transition probability matrix and combined features.

Guan DG, Liao JY, Qu ZH, Zhang Y, Qu LH.

RNA Biol. 2011 Sep-Oct;8(5):922-34. doi: 10.4161/rna.8.5.16026. Epub 2011 Sep 1.

PMID:
21881406
[PubMed - indexed for MEDLINE]
Free Article
19.

Discovery of plant microRNAs and short-interfering RNAs by deep parallel sequencing.

Chellappan P, Jin H.

Methods Mol Biol. 2009;495:121-32. doi: 10.1007/978-1-59745-477-3_11.

PMID:
19085152
[PubMed - indexed for MEDLINE]
20.

MicroRNAs and other tiny endogenous RNAs in C. elegans.

Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D.

Curr Biol. 2003 May 13;13(10):807-18.

PMID:
12747828
[PubMed - indexed for MEDLINE]
Free Article

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