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Items: 1 to 20 of 121

1.

Crystal structure and mechanism of action of the N6-methyladenine-dependent type IIM restriction endonuclease R.DpnI.

Siwek W, Czapinska H, Bochtler M, Bujnicki JM, Skowronek K.

Nucleic Acids Res. 2012 Aug;40(15):7563-72. doi: 10.1093/nar/gks428. Epub 2012 May 18.

2.

Structural basis of the methylation specificity of R.DpnI.

Mierzejewska K, Siwek W, Czapinska H, Kaus-Drobek M, Radlinska M, Skowronek K, Bujnicki JM, Dadlez M, Bochtler M.

Nucleic Acids Res. 2014 Jul;42(13):8745-54. doi: 10.1093/nar/gku546. Epub 2014 Jun 25.

3.

Characterization and crystal structure of the type IIG restriction endonuclease RM.BpuSI.

Shen BW, Xu D, Chan SH, Zheng Y, Zhu Z, Xu SY, Stoddard BL.

Nucleic Acids Res. 2011 Oct;39(18):8223-36. doi: 10.1093/nar/gkr543. Epub 2011 Jun 30.

4.

Structural analysis of the heterodimeric type IIS restriction endonuclease R.BspD6I acting as a complex between a monomeric site-specific nickase and a catalytic subunit.

Kachalova GS, Rogulin EA, Yunusova AK, Artyukh RI, Perevyazova TA, Matvienko NI, Zheleznaya LA, Bartunik HD.

J Mol Biol. 2008 Dec 12;384(2):489-502. doi: 10.1016/j.jmb.2008.09.033. Epub 2008 Sep 21.

PMID:
18835275
5.

Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains.

Armalyte E, Bujnicki JM, Giedriene J, Gasiunas G, Kosiński J, Lubys A.

J Biol Chem. 2005 Dec 16;280(50):41584-94. Epub 2005 Oct 11.

6.

Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically.

Kaus-Drobek M, Czapinska H, Sokołowska M, Tamulaitis G, Szczepanowski RH, Urbanke C, Siksnys V, Bochtler M.

Nucleic Acids Res. 2007;35(6):2035-46. Epub 2007 Mar 7.

7.

Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes.

Nakonieczna J, Kaczorowski T, Obarska-Kosinska A, Bujnicki JM.

Appl Environ Microbiol. 2009 Jan;75(1):212-23. doi: 10.1128/AEM.01322-08. Epub 2008 Nov 7.

8.

Crystal structure of the Bse634I restriction endonuclease: comparison of two enzymes recognizing the same DNA sequence.

Grazulis S, Deibert M, Rimseliene R, Skirgaila R, Sasnauskas G, Lagunavicius A, Repin V, Urbanke C, Huber R, Siksnys V.

Nucleic Acids Res. 2002 Feb 15;30(4):876-85.

9.

The recognition domain of the BpuJI restriction endonuclease in complex with cognate DNA at 1.3-A resolution.

Sukackaite R, Grazulis S, Bochtler M, Siksnys V.

J Mol Biol. 2008 May 16;378(5):1084-93. doi: 10.1016/j.jmb.2008.03.041. Epub 2008 Mar 28.

PMID:
18433771
10.

Structure of the multimodular endonuclease FokI bound to DNA.

Wah DA, Hirsch JA, Dorner LF, Schildkraut I, Aggarwal AK.

Nature. 1997 Jul 3;388(6637):97-100.

PMID:
9214510
11.

Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.

Kaminska KH, Kawai M, Boniecki M, Kobayashi I, Bujnicki JM.

BMC Struct Biol. 2008 Nov 14;8:48. doi: 10.1186/1472-6807-8-48.

12.

I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.

Orlowski J, Boniecki M, Bujnicki JM.

Bioinformatics. 2007 Mar 1;23(5):527-30. Epub 2007 Jan 22.

13.

Understanding the immutability of restriction enzymes: crystal structure of BglII and its DNA substrate at 1.5 A resolution.

Lukacs CM, Kucera R, Schildkraut I, Aggarwal AK.

Nat Struct Biol. 2000 Feb;7(2):134-40.

PMID:
10655616
14.

Crystal structures of I-SceI complexed to nicked DNA substrates: snapshots of intermediates along the DNA cleavage reaction pathway.

Moure CM, Gimble FS, Quiocho FA.

Nucleic Acids Res. 2008 Jun;36(10):3287-96. doi: 10.1093/nar/gkn178. Epub 2008 Apr 19.

15.

Novel subtype of type IIs restriction enzymes. BfiI endonuclease exhibits similarities to the EDTA-resistant nuclease Nuc of Salmonella typhimurium.

Sapranauskas R, Sasnauskas G, Lagunavicius A, Vilkaitis G, Lubys A, Siksnys V.

J Biol Chem. 2000 Oct 6;275(40):30878-85.

16.

Non-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC.

Hiller DA, Rodriguez AM, Perona JJ.

J Mol Biol. 2005 Nov 18;354(1):121-36. Epub 2005 Oct 3.

PMID:
16236314
17.

Crystal structure and function of C-terminal Sau3AI domain.

Xu CY, Yu F, Xu SJ, Ding Y, Sun LH, Tang L, Hu XJ, Zhang ZH, He JH.

Biochim Biophys Acta. 2009 Jan;1794(1):118-23. doi: 10.1016/j.bbapap.2008.09.008. Epub 2008 Oct 1.

PMID:
18930848
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