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Results: 1 to 20 of 101

1.

UNAC tetraloops: to what extent do they mimic GNRA tetraloops?

Zhao Q, Huang HC, Nagaswamy U, Xia Y, Gao X, Fox GE.

Biopolymers. 2012 Aug;97(8):617-28. doi: 10.1002/bip.22049.

PMID:
22605553
[PubMed - indexed for MEDLINE]
2.

Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

Pley HW, Flaherty KM, McKay DB.

Nature. 1994 Nov 3;372(6501):111-3.

PMID:
7526219
[PubMed - indexed for MEDLINE]
3.

Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 A resolution.

Correll CC, Swinger K.

RNA. 2003 Mar;9(3):355-63.

PMID:
12592009
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A network of heterogeneous hydrogen bonds in GNRA tetraloops.

Jucker FM, Heus HA, Yip PF, Moors EH, Pardi A.

J Mol Biol. 1996 Dec 20;264(5):968-80.

PMID:
9000624
[PubMed - indexed for MEDLINE]
5.

The application of cluster analysis in the intercomparison of loop structures in RNA.

Huang HC, Nagaswamy U, Fox GE.

RNA. 2005 Apr;11(4):412-23.

PMID:
15769871
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Co-conservation of rRNA tetraloop sequences and helix length suggests involvement of the tetraloops in higher-order interactions.

Hedenstierna KO, Siefert JL, Fox GE, Murgola EJ.

Biochimie. 2000 Mar;82(3):221-7.

PMID:
10863005
[PubMed - indexed for MEDLINE]
7.

Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins.

Thapar R, Denmon AP, Nikonowicz EP.

Wiley Interdiscip Rev RNA. 2014 Jan-Feb;5(1):49-67. doi: 10.1002/wrna.1196. Epub 2013 Oct 3. Review.

PMID:
24124096
[PubMed - indexed for MEDLINE]
8.

Structural features that give rise to the unusual stability of RNA hairpins containing GNRA loops.

Heus HA, Pardi A.

Science. 1991 Jul 12;253(5016):191-4.

PMID:
1712983
[PubMed - indexed for MEDLINE]
9.

Group I introns and GNRA tetraloops: remnants of 'The RNA world'?

Prathiba J, Malathi R.

Mol Biol Rep. 2008 Jun;35(2):239-49. Epub 2007 Apr 17.

PMID:
17437184
[PubMed - indexed for MEDLINE]
10.

Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.

Abramovitz DL, Pyle AM.

J Mol Biol. 1997 Feb 28;266(3):493-506.

PMID:
9067606
[PubMed - indexed for MEDLINE]
11.

Isolation and characterization of a family of stable RNA tetraloops with the motif YNMG that participate in tertiary interactions.

Proctor DJ, Schaak JE, Bevilacqua JM, Falzone CJ, Bevilacqua PC.

Biochemistry. 2002 Oct 8;41(40):12062-75.

PMID:
12356306
[PubMed - indexed for MEDLINE]
12.

Bioinformatics and molecular dynamics simulation study of L1 stalk non-canonical rRNA elements: kink-turns, loops, and tetraloops.

Krepl M, Réblová K, Koča J, Sponer J.

J Phys Chem B. 2013 May 9;117(18):5540-55. doi: 10.1021/jp401482m. Epub 2013 Apr 24.

PMID:
23534440
[PubMed - indexed for MEDLINE]
13.

Unusual nucleotide conformations in GNRA and UNCG type tetraloop hairpins: evidence from Raman markers assignments.

Leulliot N, Baumruk V, Abdelkafi M, Turpin PY, Namane A, Gouyette C, Huynh-Dinh T, Ghomi M.

Nucleic Acids Res. 1999 Mar 1;27(5):1398-404.

PMID:
9973632
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Molecular modelling of the 3-D structure of RNA tetraloops with different nucleotide sequences.

Kajava A, Rüterjans H.

Nucleic Acids Res. 1993 Sep 25;21(19):4556-62.

PMID:
7694230
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Attenuation of loop-receptor interactions with pseudoknot formation.

Afonin KA, Lin YP, Calkins ER, Jaeger L.

Nucleic Acids Res. 2012 Mar;40(5):2168-80. doi: 10.1093/nar/gkr926. Epub 2011 Nov 10.

PMID:
22080507
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

An RNA folding motif: GNRA tetraloop-receptor interactions.

Fiore JL, Nesbitt DJ.

Q Rev Biophys. 2013 Aug;46(3):223-64. doi: 10.1017/S0033583513000048. Epub 2013 Aug 5. Review.

PMID:
23915736
[PubMed - indexed for MEDLINE]
17.

Portability of the GN(R)A hairpin loop motif between RNA and DNA.

Blose JM, Lloyd KP, Bevilacqua PC.

Biochemistry. 2009 Sep 22;48(37):8787-94. doi: 10.1021/bi901038s.

PMID:
19681609
[PubMed - indexed for MEDLINE]
18.

Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs.

Huang S, Wang YX, Draper DE.

J Mol Biol. 1996 May 3;258(2):308-21.

PMID:
8627628
[PubMed - indexed for MEDLINE]
19.

An in vitro-selected RNA receptor for the GAAC loop: modular receptor for non-GNRA-type tetraloop.

Ishikawa J, Furuta H, Ikawa Y.

Nucleic Acids Res. 2013 Apr 1;41(6):3748-59. doi: 10.1093/nar/gkt040. Epub 2013 Feb 4.

PMID:
23382175
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comprehensive features of natural and in vitro selected GNRA tetraloop-binding receptors.

Geary C, Baudrey S, Jaeger L.

Nucleic Acids Res. 2008 Mar;36(4):1138-52. Epub 2007 Dec 23.

PMID:
18158305
[PubMed - indexed for MEDLINE]
Free PMC Article

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