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Results: 1 to 20 of 193

Similar articles for PubMed (Select 22580082)

1.

Evolutionary growth process of highly conserved sequences in vertebrate genomes.

Ishibashi M, Noda AO, Sakate R, Imanishi T.

Gene. 2012 Aug 1;504(1):1-5. doi: 10.1016/j.gene.2012.05.003. Epub 2012 May 9.

PMID:
22580082
2.

Large number of ultraconserved elements were already present in the jawed vertebrate ancestor.

Wang J, Lee AP, Kodzius R, Brenner S, Venkatesh B.

Mol Biol Evol. 2009 Mar;26(3):487-90. doi: 10.1093/molbev/msn278. Epub 2008 Dec 3.

3.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

4.

Comparison of ultra-conserved elements in drosophilids and vertebrates.

Makunin IV, Shloma VV, Stephen SJ, Pheasant M, Belyakin SN.

PLoS One. 2013 Dec 13;8(12):e82362. doi: 10.1371/journal.pone.0082362. eCollection 2013.

5.

Early evolution of conserved regulatory sequences associated with development in vertebrates.

McEwen GK, Goode DK, Parker HJ, Woolfe A, Callaway H, Elgar G.

PLoS Genet. 2009 Dec;5(12):e1000762. doi: 10.1371/journal.pgen.1000762. Epub 2009 Dec 11.

6.

Identification and characterization of lineage-specific highly conserved noncoding sequences in Mammalian genomes.

Takahashi M, Saitou N.

Genome Biol Evol. 2012;4(5):641-57. doi: 10.1093/gbe/evs035. Epub 2012 Apr 13.

7.

Ancient vertebrate conserved noncoding elements have been evolving rapidly in teleost fishes.

Lee AP, Kerk SY, Tan YY, Brenner S, Venkatesh B.

Mol Biol Evol. 2011 Mar;28(3):1205-15. doi: 10.1093/molbev/msq304. Epub 2010 Nov 15.

8.

Ultraconserved elements: genomics, function and disease.

Baira E, Greshock J, Coukos G, Zhang L.

RNA Biol. 2008 Jul-Sep;5(3):132-4. Epub 2008 Jul 25. Review.

9.

Large-scale appearance of ultraconserved elements in tetrapod genomes and slowdown of the molecular clock.

Stephen S, Pheasant M, Makunin IV, Mattick JS.

Mol Biol Evol. 2008 Feb;25(2):402-8. Epub 2007 Dec 3.

10.

Sequence and organization of coelacanth neurohypophysial hormone genes: evolutionary history of the vertebrate neurohypophysial hormone gene locus.

Gwee PC, Amemiya CT, Brenner S, Venkatesh B.

BMC Evol Biol. 2008 Mar 26;8:93. doi: 10.1186/1471-2148-8-93.

11.

Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis.

Matsunami M, Sumiyama K, Saitou N.

J Mol Evol. 2010 Dec;71(5-6):427-36. doi: 10.1007/s00239-010-9396-1. Epub 2010 Oct 28.

PMID:
20981416
12.

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype.

Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biémont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigó R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quétier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H.

Nature. 2004 Oct 21;431(7011):946-57.

PMID:
15496914
13.

Conserved regulatory modules in the Sox9 testis-specific enhancer predict roles for SOX, TCF/LEF, Forkhead, DMRT, and GATA proteins in vertebrate sex determination.

Bagheri-Fam S, Sinclair AH, Koopman P, Harley VR.

Int J Biochem Cell Biol. 2010 Mar;42(3):472-7. doi: 10.1016/j.biocel.2009.07.001. Epub 2009 Jul 16.

PMID:
19616114
14.

Conservation of a vitellogenin gene cluster in oviparous vertebrates and identification of its traces in the platypus genome.

Babin PJ.

Gene. 2008 Apr 30;413(1-2):76-82. doi: 10.1016/j.gene.2008.02.001. Epub 2008 Feb 9.

PMID:
18343608
15.

Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.

16.
17.

Comparison of Pax1/9 locus reveals 500-Myr-old syntenic block and evolutionary conserved noncoding regions.

Wang W, Zhong J, Su B, Zhou Y, Wang YQ.

Mol Biol Evol. 2007 Mar;24(3):784-91. Epub 2006 Dec 20.

18.

Ancient noncoding elements conserved in the human genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

Science. 2006 Dec 22;314(5807):1892. Erratum in: Science. 2007 Feb 9;315(5813):766.

19.

Comparative analyses of multi-species sequences from targeted genomic regions.

Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, Karolchik D, Bruen TC, Bevan R, Cutler DJ, Schwartz S, Elnitski L, Idol JR, Prasad AB, Lee-Lin SQ, Maduro VV, Summers TJ, Portnoy ME, Dietrich NL, Akhter N, Ayele K, Benjamin B, Cariaga K, Brinkley CP, Brooks SY, Granite S, Guan X, Gupta J, Haghighi P, Ho SL, Huang MC, Karlins E, Laric PL, Legaspi R, Lim MJ, Maduro QL, Masiello CA, Mastrian SD, McCloskey JC, Pearson R, Stantripop S, Tiongson EE, Tran JT, Tsurgeon C, Vogt JL, Walker MA, Wetherby KD, Wiggins LS, Young AC, Zhang LH, Osoegawa K, Zhu B, Zhao B, Shu CL, De Jong PJ, Lawrence CE, Smit AF, Chakravarti A, Haussler D, Green P, Miller W, Green ED.

Nature. 2003 Aug 14;424(6950):788-93.

PMID:
12917688
20.

Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time.

Retelska D, Beaudoing E, Notredame C, Jongeneel CV, Bucher P.

BMC Genomics. 2007 Oct 31;8:398.

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