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Results: 1 to 20 of 112

1.

Fluorescence methods to study DNA translocation and unwinding kinetics by nucleic acid motors.

Fischer CJ, Tomko EJ, Wu CG, Lohman TM.

Methods Mol Biol. 2012;875:85-104. doi: 10.1007/978-1-61779-806-1_5.

PMID:
22573437
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Kinetics of motor protein translocation on single-stranded DNA.

Fischer CJ, Wooten L, Tomko EJ, Lohman TM.

Methods Mol Biol. 2010;587:45-56. doi: 10.1007/978-1-60327-355-8_4.

PMID:
20225141
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA.

Fischer CJ, Maluf NK, Lohman TM.

J Mol Biol. 2004 Dec 10;344(5):1287-309.

PMID:
15561144
[PubMed - indexed for MEDLINE]
4.

A two-site kinetic mechanism for ATP binding and hydrolysis by E. coli Rep helicase dimer bound to a single-stranded oligodeoxynucleotide.

Hsieh J, Moore KJ, Lohman TM.

J Mol Biol. 1999 Apr 30;288(2):255-74.

PMID:
10329141
[PubMed - indexed for MEDLINE]
5.
6.

ATP-dependent translocation of proteins along single-stranded DNA: models and methods of analysis of pre-steady state kinetics.

Fischer CJ, Lohman TM.

J Mol Biol. 2004 Dec 10;344(5):1265-86.

PMID:
15561143
[PubMed - indexed for MEDLINE]
7.

Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E.coli RecBCD helicase-catalyzed DNA unwinding.

Lucius AL, Lohman TM.

J Mol Biol. 2004 Jun 11;339(4):751-71.

PMID:
15165848
[PubMed - indexed for MEDLINE]
8.

Single-turnover kinetics of helicase-catalyzed DNA unwinding monitored continuously by fluorescence energy transfer.

Bjornson KP, Amaratunga M, Moore KJ, Lohman TM.

Biochemistry. 1994 Nov 29;33(47):14306-16.

PMID:
7947840
[PubMed - indexed for MEDLINE]
9.

Helicase-catalyzed DNA unwinding: energy coupling by DNA motor proteins.

Moore KJ, Lohman TM.

Biophys J. 1995 Apr;68(4 Suppl):180S-184S; discussion 184S-185S.

PMID:
7787063
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Fluorescence stopped-flow studies of single turnover kinetics of E.coli RecBCD helicase-catalyzed DNA unwinding.

Lucius AL, Wong CJ, Lohman TM.

J Mol Biol. 2004 Jun 11;339(4):731-50.

PMID:
15165847
[PubMed - indexed for MEDLINE]
12.

General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding.

Lucius AL, Maluf NK, Fischer CJ, Lohman TM.

Biophys J. 2003 Oct;85(4):2224-39.

PMID:
14507688
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Ensemble methods for monitoring enzyme translocation along single stranded nucleic acids.

Tomko EJ, Fischer CJ, Lohman TM.

Methods. 2010 Jul;51(3):269-76. doi: 10.1016/j.ymeth.2010.03.010. Epub 2010 Apr 3. Review.

PMID:
20371288
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

ATP binding modulates the nucleic acid affinity of hepatitis C virus helicase.

Levin MK, Gurjar MM, Patel SS.

J Biol Chem. 2003 Jun 27;278(26):23311-6. Epub 2003 Mar 26.

PMID:
12660239
[PubMed - indexed for MEDLINE]
Free Article
15.

Two-state model for helicase translocation and unwinding of nucleic acids.

Garai A, Chowdhury D, Betterton MD.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061910. Epub 2008 Jun 13.

PMID:
18643303
[PubMed - indexed for MEDLINE]
16.

Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA.

Ramanagoudr-Bhojappa R, Chib S, Byrd AK, Aarattuthodiyil S, Pandey M, Patel SS, Raney KD.

J Biol Chem. 2013 May 31;288(22):16185-95. doi: 10.1074/jbc.M113.470013. Epub 2013 Apr 17.

PMID:
23596008
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mechanism of translocation and kinetics of DNA unwinding by the helicase RecG.

Martinez-Senac MM, Webb MR.

Biochemistry. 2005 Dec 27;44(51):16967-76.

PMID:
16363810
[PubMed - indexed for MEDLINE]
19.

Kinetics of ATP hydrolysis during the DNA helicase II-promoted unwinding of duplex DNA.

Yodh JG, Bryant FR.

Biochemistry. 1993 Aug 3;32(30):7765-71. Erratum in: Biochemistry 1993 Oct 5;32(39):10526.

PMID:
8394113
[PubMed - indexed for MEDLINE]
20.

E. coli Rep oligomers are required to initiate DNA unwinding in vitro.

Cheng W, Hsieh J, Brendza KM, Lohman TM.

J Mol Biol. 2001 Jul 6;310(2):327-50.

PMID:
11428893
[PubMed - indexed for MEDLINE]

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