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HPV-QUEST: A highly customized system for automated HPV sequence analysis capable of processing Next Generation sequencing data set.

Yin L, Yao J, Gardner BP, Chang K, Yu F, Goodenow MM.

Bioinformation. 2012;8(8):388-90. doi: 10.6026/97320630008388. Epub 2012 Apr 30.


Human papillomavirus genotyping by 454 next generation sequencing technology.

Barzon L, Militello V, Lavezzo E, Franchin E, Peta E, Squarzon L, Trevisan M, Pagni S, Dal Bello F, Toppo S, Palù G.

J Clin Virol. 2011 Oct;52(2):93-7. doi: 10.1016/j.jcv.2011.07.006. Epub 2011 Jul 29.


A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvão-Castro B, Vandamme AM, de Oliveira T.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W634-42. doi: 10.1093/nar/gkp455. Epub 2009 May 29.


HPV Population Profiling in Healthy Men by Next-Generation Deep Sequencing Coupled with HPV-QUEST.

Yin L, Yao J, Chang K, Gardner BP, Yu F, Giuliano AR, Goodenow MM.

Viruses. 2016 Jan 25;8(2). pii: E28. doi: 10.3390/v8020028.


Routine human papillomavirus genotyping by DNA sequencing in community hospital laboratories.

Lee SH, Vigliotti VS, Vigliotti JS, Pappu S.

Infect Agent Cancer. 2007 Jun 5;2:11.


GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.


Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.


[Future prospects of molecular epidemiology in tuberculosis].

Matsumoto T, Iwamoto T.

Kekkaku. 2009 Dec;84(12):783-4. Japanese.


Development and evaluation of a highly sensitive human papillomavirus genotyping DNA chip.

Kim KH, Yoon MS, Na YJ, Park CS, Oh MR, Moon WC.

Gynecol Oncol. 2006 Jan;100(1):38-43. Epub 2005 Oct 10.


ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.


OrchidBase: a collection of sequences of the transcriptome derived from orchids.

Fu CH, Chen YW, Hsiao YY, Pan ZJ, Liu ZJ, Huang YM, Tsai WC, Chen HH.

Plant Cell Physiol. 2011 Feb;52(2):238-43. doi: 10.1093/pcp/pcq201. Epub 2011 Jan 17.


Signature sequence validation of human papillomavirus type 16 (HPV-16) in clinical specimens.

Lee SH, Vigliotti VS, Pappu S.

J Clin Pathol. 2010 Mar;63(3):235-9. doi: 10.1136/jcp.2009.069401. Epub 2009 Oct 26.


Evaluation of a liquid bead array system for high-risk human papillomavirus detection and genotyping in comparison with Hybrid Capture II, DNA chip and sequencing methods.

Cho EJ, Do JH, Kim YS, Bae S, Ahn WS.

J Med Microbiol. 2011 Feb;60(Pt 2):162-71. doi: 10.1099/jmm.0.021642-0. Epub 2010 Oct 21.


A software pipeline for processing and identification of fungal ITS sequences.

Nilsson RH, Bok G, Ryberg M, Kristiansson E, Hallenberg N.

Source Code Biol Med. 2009 Jan 15;4:1. doi: 10.1186/1751-0473-4-1.


BLASTPLOT: a PERL module to plot next generation sequencing NCBI-BLAST results.

Herrera-Galeano JE, Frey KG, Cer RZ, Mateczun AJ, Bishop-Lilly KA, Mokashi VP.

Source Code Biol Med. 2014 Mar 31;9(1):7. doi: 10.1186/1751-0473-9-7.


Comparison of DNA sequencing and Roche Linear array in human papillomavirus (HPV) genotyping.

Giuliani L, Coletti A, Syrjänen K, Favalli C, Ciotti M.

Anticancer Res. 2006 Sep-Oct;26(5B):3939-41.

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