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Similar articles for PubMed (Select 22562492)

1.

Low sequencing efforts bias analyses of shared taxa in microbial communities.

Lemos LN, Fulthorpe RR, Roesch LF.

Folia Microbiol (Praha). 2012 Sep;57(5):409-13. doi: 10.1007/s12223-012-0155-0. Epub 2012 May 5.

PMID:
22562492
2.

Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014. Epub 2011 Mar 30.

3.

Using high throughput sequencing to explore the biodiversity in oral bacterial communities.

Diaz PI, Dupuy AK, Abusleme L, Reese B, Obergfell C, Choquette L, Dongari-Bagtzoglou A, Peterson DE, Terzi E, Strausbaugh LD.

Mol Oral Microbiol. 2012 Jun;27(3):182-201. doi: 10.1111/j.2041-1014.2012.00642.x. Epub 2012 Mar 3.

4.

Next generation sequencing to define prokaryotic and fungal diversity in the bovine rumen.

Fouts DE, Szpakowski S, Purushe J, Torralba M, Waterman RC, MacNeil MD, Alexander LJ, Nelson KE.

PLoS One. 2012;7(11):e48289. doi: 10.1371/journal.pone.0048289. Epub 2012 Nov 7.

5.

Bacterial diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis.

Pandya PR, Singh KM, Parnerkar S, Tripathi AK, Mehta HH, Rank DN, Kothari RK, Joshi CG.

J Appl Genet. 2010;51(3):395-402. doi: 10.1007/BF03208869.

PMID:
20720314
6.

Targeted recovery of novel phylogenetic diversity from next-generation sequence data.

Lynch MD, Bartram AK, Neufeld JD.

ISME J. 2012 Nov;6(11):2067-77. doi: 10.1038/ismej.2012.50. Epub 2012 Jul 12.

7.

Application of Illumina next-generation sequencing to characterize the bacterial community of the Upper Mississippi River.

Staley C, Unno T, Gould TJ, Jarvis B, Phillips J, Cotner JB, Sadowsky MJ.

J Appl Microbiol. 2013 Nov;115(5):1147-58. doi: 10.1111/jam.12323. Epub 2013 Aug 28.

PMID:
23924231
8.

454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants.

Zhang T, Shao MF, Ye L.

ISME J. 2012 Jun;6(6):1137-47. doi: 10.1038/ismej.2011.188. Epub 2011 Dec 15.

9.

Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure.

Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB.

Environ Microbiol. 2009 May;11(5):1292-302. doi: 10.1111/j.1462-2920.2008.01857.x. Epub 2009 Feb 9.

10.

Microbial biodiversity of thermophilic communities in hot mineral soils of Tramway Ridge, Mount Erebus, Antarctica.

Soo RM, Wood SA, Grzymski JJ, McDonald IR, Cary SC.

Environ Microbiol. 2009 Mar;11(3):715-28. doi: 10.1111/j.1462-2920.2009.01859.x.

PMID:
19278453
11.

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.

Schloss PD, Gevers D, Westcott SL.

PLoS One. 2011;6(12):e27310. doi: 10.1371/journal.pone.0027310. Epub 2011 Dec 14.

12.

Pyrosequencing reveals diverse and distinct sponge-specific microbial communities in sponges from a single geographical location in Irish waters.

Jackson SA, Kennedy J, Morrissey JP, O'Gara F, Dobson AD.

Microb Ecol. 2012 Jul;64(1):105-16. doi: 10.1007/s00248-011-0002-x. Epub 2012 Jan 28.

PMID:
22281804
13.

Use of multivariate statistics for 16S rRNA gene analysis of microbial communities.

Rudi K, Zimonja M, Trosvik P, Naes T.

Int J Food Microbiol. 2007 Nov 30;120(1-2):95-9. Epub 2007 Jun 12. Review.

PMID:
17602772
14.

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, McDonald IR, Cary SC.

PLoS One. 2012;7(9):e44224. doi: 10.1371/journal.pone.0044224. Epub 2012 Sep 6.

15.

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL.

Microb Ecol. 2007 Apr;53(3):371-83. Epub 2007 Mar 2.

PMID:
17334858
16.

VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.

Mori H, Maruyama F, Kurokawa K.

BMC Bioinformatics. 2010 Jun 18;11:332. doi: 10.1186/1471-2105-11-332.

17.

A novel method for determining microflora composition using dynamic phylogenetic analysis of 16S ribosomal RNA deep sequencing data.

Chan ER, Hester J, Kalady M, Xiao H, Li X, Serre D.

Genomics. 2011 Oct;98(4):253-9. doi: 10.1016/j.ygeno.2011.04.002. Epub 2011 Apr 15.

19.
20.

16S rRNA gene sequence analysis of drinking water using RNA and DNA extracts as targets for clone library development.

Revetta RP, Matlib RS, Santo Domingo JW.

Curr Microbiol. 2011 Jul;63(1):50-9. doi: 10.1007/s00284-011-9938-9. Epub 2011 May 1.

PMID:
21533782
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