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Results: 1 to 20 of 128

1.

The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships.

van Mulligen EM, Fourrier-Reglat A, Gurwitz D, Molokhia M, Nieto A, Trifiro G, Kors JA, Furlong LI.

J Biomed Inform. 2012 Oct;45(5):879-84. doi: 10.1016/j.jbi.2012.04.004. Epub 2012 Apr 25.

PMID:
22554700
[PubMed - indexed for MEDLINE]
Free Article
2.

Collaborative text-annotation resource for disease-centered relation extraction from biomedical text.

Cano C, Monaghan T, Blanco A, Wall DP, Peshkin L.

J Biomed Inform. 2009 Oct;42(5):967-77. doi: 10.1016/j.jbi.2009.02.001. Epub 2009 Feb 14.

PMID:
19232400
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Automatic recognition of disorders, findings, pharmaceuticals and body structures from clinical text: an annotation and machine learning study.

Skeppstedt M, Kvist M, Nilsson GH, Dalianis H.

J Biomed Inform. 2014 Jun;49:148-58. doi: 10.1016/j.jbi.2014.01.012. Epub 2014 Feb 4.

PMID:
24508177
[PubMed - in process]
Free Article
4.

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D.

BMC Bioinformatics. 2008 Apr 11;9 Suppl 3:S3. doi: 10.1186/1471-2105-9-S3-S3.

PMID:
18426548
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

BioCause: Annotating and analysing causality in the biomedical domain.

Mihăilă C, Ohta T, Pyysalo S, Ananiadou S.

BMC Bioinformatics. 2013 Jan 16;14:2. doi: 10.1186/1471-2105-14-2.

PMID:
23323613
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Enriching a biomedical event corpus with meta-knowledge annotation.

Thompson P, Nawaz R, McNaught J, Ananiadou S.

BMC Bioinformatics. 2011 Oct 10;12:393. doi: 10.1186/1471-2105-12-393.

PMID:
21985429
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

BioInfer: a corpus for information extraction in the biomedical domain.

Pyysalo S, Ginter F, Heimonen J, Björne J, Boberg J, Järvinen J, Salakoski T.

BMC Bioinformatics. 2007 Feb 9;8:50.

PMID:
17291334
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The EU-ADR Web Platform: delivering advanced pharmacovigilance tools.

Oliveira JL, Lopes P, Nunes T, Campos D, Boyer S, Ahlberg E, van Mulligen EM, Kors JA, Singh B, Furlong LI, Sanz F, Bauer-Mehren A, Carrascosa MC, Mestres J, Avillach P, Diallo G, Díaz Acedo C, van der Lei J.

Pharmacoepidemiol Drug Saf. 2013 May;22(5):459-67. doi: 10.1002/pds.3375. Epub 2012 Dec 4.

PMID:
23208789
[PubMed - indexed for MEDLINE]
9.

Computational polypharmacology with text mining and ontologies.

Plake C, Schroeder M.

Curr Pharm Biotechnol. 2011 Mar 1;12(3):449-57. Review.

PMID:
21133848
[PubMed - indexed for MEDLINE]
10.

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Rebholz-Schuhmann D, Jimeno Yepes A, Li C, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila JB, Baker CJ, Kuo CJ, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong LI, Rautschka M, Neves ML, Pascual-Montano A, Wei Q, Collier N, Chowdhury MF, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina JL, van Mulligen E, Kors J, Hahn U.

J Biomed Semantics. 2011 Oct 6;2 Suppl 5:S11. doi: 10.1186/2041-1480-2-S5-S11.

PMID:
22166494
[PubMed]
Free PMC Article
11.

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.

Arighi CN, Carterette B, Cohen KB, Krallinger M, Wilbur WJ, Fey P, Dodson R, Cooper L, Van Slyke CE, Dahdul W, Mabee P, Li D, Harris B, Gillespie M, Jimenez S, Roberts P, Matthews L, Becker K, Drabkin H, Bello S, Licata L, Chatr-aryamontri A, Schaeffer ML, Park J, Haendel M, Van Auken K, Li Y, Chan J, Muller HM, Cui H, Balhoff JP, Chi-Yang Wu J, Lu Z, Wei CH, Tudor CO, Raja K, Subramani S, Natarajan J, Cejuela JM, Dubey P, Wu C.

Database (Oxford). 2013 Jan 17;2013:bas056. doi: 10.1093/database/bas056. Print 2013.

PMID:
23327936
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.

Verspoor K, Cohen KB, Lanfranchi A, Warner C, Johnson HL, Roeder C, Choi JD, Funk C, Malenkiy Y, Eckert M, Xue N, Baumgartner WA Jr, Bada M, Palmer M, Hunter LE.

BMC Bioinformatics. 2012 Aug 17;13:207. doi: 10.1186/1471-2105-13-207.

PMID:
22901054
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

CALBC silver standard corpus.

Rebholz-Schuhmann D, Jimeno Yepes AJ, Van Mulligen EM, Kang N, Kors J, Milward D, Corbett P, Buyko E, Beisswanger E, Hahn U.

J Bioinform Comput Biol. 2010 Feb;8(1):163-79.

PMID:
20183881
[PubMed - indexed for MEDLINE]
14.

Feature selection techniques for maximum entropy based biomedical named entity recognition.

Saha SK, Sarkar S, Mitra P.

J Biomed Inform. 2009 Oct;42(5):905-11. doi: 10.1016/j.jbi.2008.12.012. Epub 2009 Jan 23.

PMID:
19535010
[PubMed - indexed for MEDLINE]
Free Article
15.

Using text mining to link journal articles to neuroanatomical databases.

French L, Pavlidis P.

J Comp Neurol. 2012 Jun 1;520(8):1772-83. doi: 10.1002/cne.23012.

PMID:
22120205
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A UIMA wrapper for the NCBO annotator.

Roeder C, Jonquet C, Shah NH, Baumgartner WA Jr, Verspoor K, Hunter L.

Bioinformatics. 2010 Jul 15;26(14):1800-1. doi: 10.1093/bioinformatics/btq250. Epub 2010 May 26.

PMID:
20505005
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mining relational paths in integrated biomedical data.

He B, Tang J, Ding Y, Wang H, Sun Y, Shin JH, Chen B, Moorthy G, Qiu J, Desai P, Wild DJ.

PLoS One. 2011;6(12):e27506. doi: 10.1371/journal.pone.0027506. Epub 2011 Dec 6.

PMID:
22162991
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Investigating heterogeneous protein annotations toward cross-corpora utilization.

Wang Y, Kim JD, Saetre R, Pyysalo S, Tsujii J.

BMC Bioinformatics. 2009 Dec 9;10:403. doi: 10.1186/1471-2105-10-403.

PMID:
19995463
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Community annotation experiment for ground truth generation for the i2b2 medication challenge.

Uzuner O, Solti I, Xia F, Cadag E.

J Am Med Inform Assoc. 2010 Sep-Oct;17(5):519-23. doi: 10.1136/jamia.2010.004200.

PMID:
20819855
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

NCBI disease corpus: a resource for disease name recognition and concept normalization.

Doğan RI, Leaman R, Lu Z.

J Biomed Inform. 2014 Feb;47:1-10. doi: 10.1016/j.jbi.2013.12.006. Epub 2014 Jan 3.

PMID:
24393765
[PubMed - in process]
Free Article

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