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Items: 1 to 20 of 124

1.

Comparative analysis of grapevine whole-genome gene predictions, functional annotation, categorization and integration of the predicted gene sequences.

Grimplet J, Van Hemert J, Carbonell-Bejerano P, Díaz-Riquelme J, Dickerson J, Fennell A, Pezzotti M, Martínez-Zapater JM.

BMC Res Notes. 2012 May 3;5:213. doi: 10.1186/1756-0500-5-213.

2.

VitisNet: "Omics" integration through grapevine molecular networks.

Grimplet J, Cramer GR, Dickerson JA, Mathiason K, Van Hemert J, Fennell AY.

PLoS One. 2009 Dec 21;4(12):e8365. doi: 10.1371/journal.pone.0008365.

3.

Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays.

Martin DM, Aubourg S, Schouwey MB, Daviet L, Schalk M, Toub O, Lund ST, Bohlmann J.

BMC Plant Biol. 2010 Oct 21;10:226. doi: 10.1186/1471-2229-10-226.

5.

Comprehensive analysis of NAC domain transcription factor gene family in Vitis vinifera.

Wang N, Zheng Y, Xin H, Fang L, Li S.

Plant Cell Rep. 2013 Jan;32(1):61-75. doi: 10.1007/s00299-012-1340-y. Epub 2012 Sep 15.

PMID:
22983198
6.

The grapevine gene nomenclature system.

Grimplet J, Adam-Blondon AF, Bert PF, Bitz O, Cantu D, Davies C, Delrot S, Pezzotti M, Rombauts S, Cramer GR.

BMC Genomics. 2014 Dec 6;15:1077. doi: 10.1186/1471-2164-15-1077.

7.

VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine).

Wong DC, Sweetman C, Drew DP, Ford CM.

BMC Genomics. 2013 Dec 16;14:882. doi: 10.1186/1471-2164-14-882.

8.

Gene coexpression network analysis as a source of functional annotation for rice genes.

Childs KL, Davidson RM, Buell CR.

PLoS One. 2011;6(7):e22196. doi: 10.1371/journal.pone.0022196. Epub 2011 Jul 22.

9.

Genome-wide analysis of the SET DOMAIN GROUP family in grapevine.

Aquea F, Vega A, Timmermann T, Poupin MJ, Arce-Johnson P.

Plant Cell Rep. 2011 Jun;30(6):1087-97. doi: 10.1007/s00299-011-1015-0. Epub 2011 Feb 4.

PMID:
21293861
10.

Re-annotation of the woodland strawberry (Fragaria vesca) genome.

Darwish O, Shahan R, Liu Z, Slovin JP, Alkharouf NW.

BMC Genomics. 2015 Jan 27;16:29. doi: 10.1186/s12864-015-1221-1.

11.

Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding.

Ralph SG, Chun HJ, Cooper D, Kirkpatrick R, Kolosova N, Gunter L, Tuskan GA, Douglas CJ, Holt RA, Jones SJ, Marra MA, Bohlmann J.

BMC Genomics. 2008 Jan 29;9:57. doi: 10.1186/1471-2164-9-57.

12.

Improvement of whole-genome annotation of cereals through comparative analyses.

Zhu W, Buell CR.

Genome Res. 2007 Mar;17(3):299-310. Epub 2007 Feb 6.

13.

Construction of coffee transcriptome networks based on gene annotation semantics.

Castillo LF, Galeano N, Isaza GA, Gaitán A.

J Integr Bioinform. 2012 Jul 24;9(3):205. doi: 10.2390/biecoll-jib-2012-205.

PMID:
22829576
14.

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.

Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization.

Nature. 2007 Sep 27;449(7161):463-7. Epub 2007 Aug 26.

PMID:
17721507
15.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

16.

Analysis of high-identity segmental duplications in the grapevine genome.

Giannuzzi G, D'Addabbo P, Gasparro M, Martinelli M, Carelli FN, Antonacci D, Ventura M.

BMC Genomics. 2011 Aug 26;12:436. doi: 10.1186/1471-2164-12-436.

17.

MGcV: the microbial genomic context viewer for comparative genome analysis.

Overmars L, Kerkhoven R, Siezen RJ, Francke C.

BMC Genomics. 2013 Apr 1;14:209. doi: 10.1186/1471-2164-14-209.

18.

A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance.

Moroldo M, Paillard S, Marconi R, Fabrice L, Canaguier A, Cruaud C, De Berardinis V, Guichard C, Brunaud V, Le Clainche I, Scalabrin S, Testolin R, Di Gaspero G, Morgante M, Adam-Blondon AF.

BMC Plant Biol. 2008 Jun 13;8:66. doi: 10.1186/1471-2229-8-66.

19.

Analysis of expressed sequence tags from grapevine flower and fruit and development of simple sequence repeat markers.

Wang XC, Guo L, Shangguan LF, Wang C, Yang G, Qu SC, Fang JG.

Mol Biol Rep. 2012 Jun;39(6):6825-34. doi: 10.1007/s11033-012-1507-1. Epub 2012 Feb 9.

PMID:
22318547
20.

Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine.

Rotter A, Camps C, Lohse M, Kappel C, Pilati S, Hren M, Stitt M, Coutos-Thévenot P, Moser C, Usadel B, Delrot S, Gruden K.

BMC Plant Biol. 2009 Aug 5;9:104. doi: 10.1186/1471-2229-9-104.

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