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Results: 1 to 20 of 96

1.

Exploring the DNA-recognition potential of homeodomains.

Chu SW, Noyes MB, Christensen RG, Pierce BG, Zhu LJ, Weng Z, Stormo GD, Wolfe SA.

Genome Res. 2012 Oct;22(10):1889-98. doi: 10.1101/gr.139014.112. Epub 2012 Apr 26.

PMID:
22539651
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Interchange of DNA-binding modes in the deformed and ultrabithorax homeodomains: a structural role for the N-terminal arm.

Frazee RW, Taylor JA, Tullius TD.

J Mol Biol. 2002 Nov 1;323(4):665-83.

PMID:
12419257
[PubMed - indexed for MEDLINE]
3.

Comparative stability analysis of the thyroid transcription factor 1 and Antennapedia homeodomains: evidence for residue 54 in controlling the structural stability of the recognition helix.

Tell G, Acquaviva R, Formisano S, Fogolari F, Pucillo C, Damante G.

Int J Biochem Cell Biol. 1999 Nov;31(11):1339-53.

PMID:
10605826
[PubMed - indexed for MEDLINE]
4.

Cooperative interactions between paired domain and homeodomain.

Jun S, Desplan C.

Development. 1996 Sep;122(9):2639-50.

PMID:
8787739
[PubMed - indexed for MEDLINE]
Free Article
5.

High mobility group I proteins interfere with the homeodomains binding to DNA.

Arlotta P, Rustighi A, Mantovani F, Manfioletti G, Giancotti V, Tell G, Damante G.

J Biol Chem. 1997 Nov 21;272(47):29904-10.

PMID:
9368066
[PubMed - indexed for MEDLINE]
Free Article
6.

Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites.

Noyes MB, Christensen RG, Wakabayashi A, Stormo GD, Brodsky MH, Wolfe SA.

Cell. 2008 Jun 27;133(7):1277-89. doi: 10.1016/j.cell.2008.05.023.

PMID:
18585360
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Sequence-specific DNA recognition by the thyroid transcription factor-1 homeodomain.

Damante G, Fabbro D, Pellizzari L, Civitareale D, Guazzi S, Polycarpou-Schwartz M, Cauci S, Quadrifoglio F, Formisano S, Di Lauro R.

Nucleic Acids Res. 1994 Aug 11;22(15):3075-83.

PMID:
7915030
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences.

Berger MF, Badis G, Gehrke AR, Talukder S, Philippakis AA, Peña-Castillo L, Alleyne TM, Mnaimneh S, Botvinnik OB, Chan ET, Khalid F, Zhang W, Newburger D, Jaeger SA, Morris QD, Bulyk ML, Hughes TR.

Cell. 2008 Jun 27;133(7):1266-76. doi: 10.1016/j.cell.2008.05.024.

PMID:
18585359
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity.

Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM.

Development. 2012 Mar;139(6):1164-74. doi: 10.1242/dev.077362. Epub 2012 Feb 1.

PMID:
22296846
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Insights into nonspecific binding of homeodomains from a structure of MATalpha2 bound to DNA.

Aishima J, Wolberger C.

Proteins. 2003 Jun 1;51(4):544-51.

PMID:
12784213
[PubMed - indexed for MEDLINE]
11.

PDZ domain-mediated dimerization and homeodomain-directed specificity are required for high-affinity DNA binding by SATB1.

Purbey PK, Singh S, Kumar PP, Mehta S, Ganesh KN, Mitra D, Galande S.

Nucleic Acids Res. 2008 Apr;36(7):2107-22. doi: 10.1093/nar/gkm1151. Epub 2008 Jan 10.

PMID:
18187506
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Conservation and diversification in homeodomain-DNA interactions: a comparative genetic analysis.

Wilson DS, Sheng G, Jun S, Desplan C.

Proc Natl Acad Sci U S A. 1996 Jul 9;93(14):6886-91.

PMID:
8692913
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Structure and properties of a re-engineered homeodomain protein-DNA interface.

Simon MD, Feldman ME, Rauh D, Maris AE, Wemmer DE, Shokat KM.

ACS Chem Biol. 2006 Dec 15;1(12):755-60.

PMID:
17240973
[PubMed - indexed for MEDLINE]
14.

Engineering the loop region of a homeodomain-leucine zipper protein promotes efficient binding to a monomeric DNA binding site.

Tron AE, Welchen E, Gonzalez DH.

Biochemistry. 2004 Dec 21;43(50):15845-51.

PMID:
15595839
[PubMed - indexed for MEDLINE]
15.

Autoregulatory binding sites in the zebrafish six3a promoter region define a new recognition sequence for Six3 proteins.

Suh CS, Ellingsen S, Austbø L, Zhao XF, Seo HC, Fjose A.

FEBS J. 2010 Apr;277(7):1761-75. doi: 10.1111/j.1742-4658.2010.07599.x. Epub 2010 Feb 24.

PMID:
20193042
[PubMed - indexed for MEDLINE]
16.

A phage display selection of engrailed homeodomain mutants and the importance of residue Q50.

Simon MD, Sato K, Weiss GA, Shokat KM.

Nucleic Acids Res. 2004 Jul 9;32(12):3623-31. Print 2004.

PMID:
15247345
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Homeodomain proteins: what governs their ability to recognize specific DNA sequences?

Draganescu A, Levin JR, Tullius TD.

J Mol Biol. 1995 Jul 28;250(5):595-608.

PMID:
7623378
[PubMed - indexed for MEDLINE]
18.

Reprogrammable recognition codes in bicoid homeodomain-DNA interaction.

Dave V, Zhao C, Yang F, Tung CS, Ma J.

Mol Cell Biol. 2000 Oct;20(20):7673-84.

PMID:
11003663
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

DNA-binding specificity of the homeodomain-leucine zipper domain.

Sessa G, Morelli G, Ruberti I.

J Mol Biol. 1997 Dec 5;274(3):303-9.

PMID:
9405140
[PubMed - indexed for MEDLINE]
20.

The optimal binding sequence of the Hox11 protein contains a predicted recognition core motif.

Tang S, Breitman ML.

Nucleic Acids Res. 1995 Jun 11;23(11):1928-35.

PMID:
7596820
[PubMed - indexed for MEDLINE]
Free PMC Article
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