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Similar articles for PubMed (Select 22532662)

1.

Two distinct overstretched DNA structures revealed by single-molecule thermodynamics measurements.

Zhang X, Chen H, Fu H, Doyle PS, Yan J.

Proc Natl Acad Sci U S A. 2012 May 22;109(21):8103-8. doi: 10.1073/pnas.1109824109. Epub 2012 Apr 24.

2.

Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry.

Zhang X, Chen H, Le S, Rouzina I, Doyle PS, Yan J.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3865-70. doi: 10.1073/pnas.1213740110. Epub 2013 Feb 19.

3.

The contribution of DNA single-stranded order to the thermodynamics of duplex formation.

Vesnaver G, Breslauer KJ.

Proc Natl Acad Sci U S A. 1991 May 1;88(9):3569-73.

4.

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Apr;80(4):1932-9.

5.

Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA.

Movileanu L, Benevides JM, Thomas GJ Jr.

Nucleic Acids Res. 2002 Sep 1;30(17):3767-77.

6.

Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.

Vallone PM, Paner TM, Hilario J, Lane MJ, Faldasz BD, Benight AS.

Biopolymers. 1999 Oct 5;50(4):425-42.

PMID:
10423551
8.
9.

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization.

Einert TR, Orland H, Netz RR.

Eur Phys J E Soft Matter. 2011 Jun;34(6):1-15. doi: 10.1140/epje/i2011-11055-2. Epub 2011 Jun 1.

PMID:
21626368
10.

Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching using fluorescence microscopy.

King GA, Gross P, Bockelmann U, Modesti M, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):3859-64. doi: 10.1073/pnas.1213676110. Epub 2013 Feb 19.

11.
12.

Two distinct overstretched DNA states.

Fu H, Chen H, Marko JF, Yan J.

Nucleic Acids Res. 2010 Sep;38(16):5594-600. doi: 10.1093/nar/gkq309. Epub 2010 Apr 30.

13.

Unraveling the structure of DNA during overstretching by using multicolor, single-molecule fluorescence imaging.

van Mameren J, Gross P, Farge G, Hooijman P, Modesti M, Falkenberg M, Wuite GJ, Peterman EJ.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18231-6. doi: 10.1073/pnas.0904322106. Epub 2009 Oct 19.

14.

Coarse-grained simulations of DNA overstretching.

Romano F, Chakraborty D, Doye JP, Ouldridge TE, Louis AA.

J Chem Phys. 2013 Feb 28;138(8):085101. doi: 10.1063/1.4792252.

PMID:
23464177
15.

Salt dependence of the elasticity and overstretching transition of single DNA molecules.

Wenner JR, Williams MC, Rouzina I, Bloomfield VA.

Biophys J. 2002 Jun;82(6):3160-9.

16.

Transition dynamics and selection of the distinct S-DNA and strand unpeeling modes of double helix overstretching.

Fu H, Chen H, Zhang X, Qu Y, Marko JF, Yan J.

Nucleic Acids Res. 2011 Apr;39(8):3473-81. doi: 10.1093/nar/gkq1278. Epub 2010 Dec 21.

17.

DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.

Shokri L, McCauley MJ, Rouzina I, Williams MC.

Biophys J. 2008 Aug;95(3):1248-55. doi: 10.1529/biophysj.108.132688. Epub 2008 Apr 18.

18.

Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Manghi M, Destainville N, Palmeri J.

Eur Phys J E Soft Matter. 2012 Oct;35(10):110. doi: 10.1140/epje/i2012-12110-2. Epub 2012 Oct 29.

PMID:
23099534
19.

Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Williams MC, Wenner JR, Rouzina I, Bloomfield VA.

Biophys J. 2001 Feb;80(2):874-81.

20.
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