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Results: 1 to 20 of 118

1.

The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups.

Curtis C, Shah SP, Chin SF, Turashvili G, Rueda OM, Dunning MJ, Speed D, Lynch AG, Samarajiwa S, Yuan Y, Gräf S, Ha G, Haffari G, Bashashati A, Russell R, McKinney S; METABRIC Group, Langerød A, Green A, Provenzano E, Wishart G, Pinder S, Watson P, Markowetz F, Murphy L, Ellis I, Purushotham A, Børresen-Dale AL, Brenton JD, Tavaré S, Caldas C, Aparicio S.

Nature. 2012 Apr 18;486(7403):346-52. doi: 10.1038/nature10983.

PMID:
22522925
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Comprehensive molecular portraits of human breast tumours.

Cancer Genome Atlas Network.

Nature. 2012 Oct 4;490(7418):61-70. doi: 10.1038/nature11412. Epub 2012 Sep 23.

PMID:
23000897
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The shaping and functional consequences of the microRNA landscape in breast cancer.

Dvinge H, Git A, Gräf S, Salmon-Divon M, Curtis C, Sottoriva A, Zhao Y, Hirst M, Armisen J, Miska EA, Chin SF, Provenzano E, Turashvili G, Green A, Ellis I, Aparicio S, Caldas C.

Nature. 2013 May 16;497(7449):378-82. doi: 10.1038/nature12108. Epub 2013 May 5.

PMID:
23644459
[PubMed - indexed for MEDLINE]
4.

High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer.

Staaf J, Jönsson G, Ringnér M, Vallon-Christersson J, Grabau D, Arason A, Gunnarsson H, Agnarsson BA, Malmström PO, Johannsson OT, Loman N, Barkardottir RB, Borg A.

Breast Cancer Res. 2010;12(3):R25. doi: 10.1186/bcr2568. Epub 2010 May 6.

PMID:
20459607
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers.

Natrajan R, Weigelt B, Mackay A, Geyer FC, Grigoriadis A, Tan DS, Jones C, Lord CJ, Vatcheva R, Rodriguez-Pinilla SM, Palacios J, Ashworth A, Reis-Filho JS.

Breast Cancer Res Treat. 2010 Jun;121(3):575-89. doi: 10.1007/s10549-009-0501-3. Epub 2009 Aug 18.

PMID:
19688261
[PubMed - indexed for MEDLINE]
6.

Copy number aberrations define breast cancer subgroups.

[No authors listed]

Cancer Discov. 2012 Jun;2(6):OF6. doi: 10.1158/2159-8290.CD-RW2012-054. Epub 2012 Apr 26.

PMID:
22684464
[PubMed - indexed for MEDLINE]
7.

Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.

Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.

Exp Mol Med. 2009 Jul 31;41(7):462-70. doi: 10.3858/emm.2009.41.7.051.

PMID:
19322034
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

High-resolution genomic screening in mantle cell lymphoma--specific changes correlate with genomic complexity, the proliferation signature and survival.

Halldórsdóttir AM, Sander B, Göransson H, Isaksson A, Kimby E, Mansouri M, Rosenquist R, Ehrencrona H.

Genes Chromosomes Cancer. 2011 Feb;50(2):113-21. doi: 10.1002/gcc.20836.

PMID:
21117067
[PubMed - indexed for MEDLINE]
9.

Identifying in-trans process associated genes in breast cancer by integrated analysis of copy number and expression data.

Aure MR, Steinfeld I, Baumbusch LO, Liestøl K, Lipson D, Nyberg S, Naume B, Sahlberg KK, Kristensen VN, Børresen-Dale AL, Lingjærde OC, Yakhini Z.

PLoS One. 2013;8(1):e53014. doi: 10.1371/journal.pone.0053014. Epub 2013 Jan 30.

PMID:
23382830
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The shaping and functional consequences of the dosage effect landscape in multiple myeloma.

Samur MK, Shah PK, Wang X, Minvielle S, Magrangeas F, Avet-Loiseau H, Munshi NC, Li C.

BMC Genomics. 2013 Oct 2;14:672. doi: 10.1186/1471-2164-14-672.

PMID:
24088394
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Proteomic changes resulting from gene copy number variations in cancer cells.

Geiger T, Cox J, Mann M.

PLoS Genet. 2010 Sep 2;6(9):e1001090. doi: 10.1371/journal.pgen.1001090.

PMID:
20824076
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Integration of transcript expression, copy number and LOH analysis of infiltrating ductal carcinoma of the breast.

Hawthorn L, Luce J, Stein L, Rothschild J.

BMC Cancer. 2010 Aug 27;10:460. doi: 10.1186/1471-2407-10-460.

PMID:
20799942
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genomics: the breast cancer landscape.

Gray J, Druker B.

Nature. 2012 Jun 20;486(7403):328-9. doi: 10.1038/486328a. No abstract available.

PMID:
22722187
[PubMed - indexed for MEDLINE]
14.

Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer.

Bergamaschi A, Kim YH, Wang P, Sørlie T, Hernandez-Boussard T, Lonning PE, Tibshirani R, Børresen-Dale AL, Pollack JR.

Genes Chromosomes Cancer. 2006 Nov;45(11):1033-40.

PMID:
16897746
[PubMed - indexed for MEDLINE]
15.

Germline DNA copy number aberrations identified as potential prognostic factors for breast cancer recurrence.

Sapkota Y, Ghosh S, Lai R, Coe BP, Cass CE, Yasui Y, Mackey JR, Damaraju S.

PLoS One. 2013;8(1):e53850. doi: 10.1371/journal.pone.0053850. Epub 2013 Jan 16.

PMID:
23342018
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer.

Ha G, Roth A, Lai D, Bashashati A, Ding J, Goya R, Giuliany R, Rosner J, Oloumi A, Shumansky K, Chin SF, Turashvili G, Hirst M, Caldas C, Marra MA, Aparicio S, Shah SP.

Genome Res. 2012 Oct;22(10):1995-2007. doi: 10.1101/gr.137570.112. Epub 2012 May 25.

PMID:
22637570
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma.

Valsesia A, Rimoldi D, Martinet D, Ibberson M, Benaglio P, Quadroni M, Waridel P, Gaillard M, Pidoux M, Rapin B, Rivolta C, Xenarios I, Simpson AJ, Antonarakis SE, Beckmann JS, Jongeneel CV, Iseli C, Stevenson BJ.

PLoS One. 2011 Apr 8;6(4):e18369. doi: 10.1371/journal.pone.0018369.

PMID:
21494657
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Inferring causal genomic alterations in breast cancer using gene expression data.

Tran LM, Zhang B, Zhang Z, Zhang C, Xie T, Lamb JR, Dai H, Schadt EE, Zhu J.

BMC Syst Biol. 2011 Aug 1;5:121. doi: 10.1186/1752-0509-5-121.

PMID:
21806811
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide analysis identifies 16q deletion associated with survival, molecular subtypes, mRNA expression, and germline haplotypes in breast cancer patients.

Nordgard SH, Johansen FE, Alnaes GI, Bucher E, Syvänen AC, Naume B, Børresen-Dale AL, Kristensen VN.

Genes Chromosomes Cancer. 2008 Aug;47(8):680-96. doi: 10.1002/gcc.20569.

PMID:
18398821
[PubMed - indexed for MEDLINE]
20.

Genomic subtypes of breast cancer identified by array-comparative genomic hybridization display distinct molecular and clinical characteristics.

Jönsson G, Staaf J, Vallon-Christersson J, Ringnér M, Holm K, Hegardt C, Gunnarsson H, Fagerholm R, Strand C, Agnarsson BA, Kilpivaara O, Luts L, Heikkilä P, Aittomäki K, Blomqvist C, Loman N, Malmström P, Olsson H, Johannsson OT, Arason A, Nevanlinna H, Barkardottir RB, Borg A.

Breast Cancer Res. 2010;12(3):R42. doi: 10.1186/bcr2596. Epub 2010 Jun 24.

PMID:
20576095
[PubMed - indexed for MEDLINE]
Free PMC Article

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