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Items: 1 to 20 of 158

1.

An image analysis toolbox for high-throughput C. elegans assays.

Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O'Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE.

Nat Methods. 2012 Apr 22;9(7):714-6. doi: 10.1038/nmeth.1984.

2.

Morphology-guided graph search for untangling objects: C. elegans analysis.

Raviv TR, Ljosa V, Conery AL, Ausubel FM, Carpenter AE, Golland P, Wählby C.

Med Image Comput Comput Assist Interv. 2010;13(Pt 3):634-41.

3.

Automated Processing of Imaging Data through Multi-tiered Classification of Biological Structures Illustrated Using Caenorhabditis elegans.

Zhan M, Crane MM, Entchev EV, Caballero A, Fernandes de Abreu DA, Ch'ng Q, Lu H.

PLoS Comput Biol. 2015 Apr 24;11(4):e1004194. doi: 10.1371/journal.pcbi.1004194. eCollection 2015 Apr.

4.

Workflow and metrics for image quality control in large-scale high-content screens.

Bray MA, Fraser AN, Hasaka TP, Carpenter AE.

J Biomol Screen. 2012 Feb;17(2):266-74. doi: 10.1177/1087057111420292. Epub 2011 Sep 28.

5.

DetecTiff: a novel image analysis routine for high-content screening microscopy.

Gilbert DF, Meinhof T, Pepperkok R, Runz H.

J Biomol Screen. 2009 Sep;14(8):944-55. doi: 10.1177/1087057109339523. Epub 2009 Jul 29.

PMID:
19641223
6.

High-content screening: imaging, analysis, and implementation.

McGee J.

J Biomol Screen. 2012 Feb;17(2):275-7. doi: 10.1177/1087057111432529. No abstract available.

PMID:
22282877
7.

Unsupervised modeling of cell morphology dynamics for time-lapse microscopy.

Zhong Q, Busetto AG, Fededa JP, Buhmann JM, Gerlich DW.

Nat Methods. 2012 May 27;9(7):711-3. doi: 10.1038/nmeth.2046.

PMID:
22635062
8.

A fast, fully automated cell segmentation algorithm for high-throughput and high-content screening.

Fenistein D, Lenseigne B, Christophe T, Brodin P, Genovesio A.

Cytometry A. 2008 Oct;73(10):958-64. doi: 10.1002/cyto.a.20627.

9.

Straightening Caenorhabditis elegans images.

Peng H, Long F, Liu X, Kim SK, Myers EW.

Bioinformatics. 2008 Jan 15;24(2):234-42. Epub 2007 Nov 19.

10.

DevStaR: high-throughput quantification of C. elegans developmental stages.

White AG, Lees B, Kao HL, Cipriani PG, Munarriz E, Paaby AB, Erickson K, Guzman S, Rattanakorn K, Sontag E, Geiger D, Gunsalus KC, Piano F.

IEEE Trans Med Imaging. 2013 Oct;32(10):1791-803. doi: 10.1109/TMI.2013.2265092. Epub 2013 May 29.

PMID:
23722463
11.

Tracking the swimming motions of C. elegans worms with applications in aging studies.

Restif C, Metaxas D.

Med Image Comput Comput Assist Interv. 2008;11(Pt 1):35-42.

PMID:
18979729
12.

Automated classification of mitotic phenotypes of human cells using fluorescent proteins.

Harder N, Eils R, Rohr K.

Methods Cell Biol. 2008;85:539-54.

PMID:
18155478
13.

Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images.

Selinummi J, Ruusuvuori P, Podolsky I, Ozinsky A, Gold E, Yli-Harja O, Aderem A, Shmulevich I.

PLoS One. 2009 Oct 22;4(10):e7497. doi: 10.1371/journal.pone.0007497.

14.

Automated Microarray Image Analysis Toolbox for MATLAB.

White AM, Daly DS, Willse AR, Protic M, Chandler DP.

Bioinformatics. 2005 Sep 1;21(17):3578-9. Epub 2005 Jul 26.

15.

Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.

Kamentsky L, Jones TR, Fraser A, Bray MA, Logan DJ, Madden KL, Ljosa V, Rueden C, Eliceiri KW, Carpenter AE.

Bioinformatics. 2011 Apr 15;27(8):1179-80. doi: 10.1093/bioinformatics/btr095. Epub 2011 Feb 23.

16.

Intracellular Ca2+ imaging in C. elegans.

Kerr RA, Schafer WR.

Methods Mol Biol. 2006;351:253-64. Review.

PMID:
16988439
17.

CellProfiler and KNIME: open source tools for high content screening.

Stöter M, Niederlein A, Barsacchi R, Meyenhofer F, Brandl H, Bickle M.

Methods Mol Biol. 2013;986:105-22. doi: 10.1007/978-1-62703-311-4_8.

PMID:
23436409
18.

Digital autofocus methods for automated microscopy.

Shen F, Hodgson L, Hahn K.

Methods Enzymol. 2006;414:620-32. Review.

PMID:
17110214
19.

Computational restoration of fluorescence images: noise reduction, deconvolution, and pattern recognition.

Wang YL.

Methods Cell Biol. 2003;72:337-48. Review. No abstract available.

PMID:
14719339
20.

Multi-parametric analysis of cell death pathways using live-cell microscopy.

Joshi GN, Knecht DA.

Curr Protoc Toxicol. 2013 Nov 21;58:Unit 4.40.. doi: 10.1002/0471140856.tx0440s58.

PMID:
24510543
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