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Results: 1 to 20 of 89

1.

Genome-wide screen for miRNA targets using the MISSION target ID library.

Coussens MJ, Forbes K, Kreader C, Sago J, Cupp C, Swarthout J.

J Vis Exp. 2012 Apr 6;(62):e3303. doi: 10.3791/3303.

PMID:
22508434
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Large-scale screens of miRNA-mRNA interactions unveiled that the 3'UTR of a gene is targeted by multiple miRNAs.

Zhou P, Xu W, Peng X, Luo Z, Xing Q, Chen X, Hou C, Liang W, Zhou J, Wu X, Songyang Z, Jiang S.

PLoS One. 2013 Jul 9;8(7):e68204. doi: 10.1371/journal.pone.0068204. Print 2013.

PMID:
23874542
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identifying targets of human micrornas with the LightSwitch Luciferase Assay System using 3'UTR-reporter constructs and a microRNA mimic in adherent cells.

Aldred SF, Collins P, Trinklein N.

J Vis Exp. 2011 Sep 28;(55). pii: 3343. doi: 10.3791/3343.

PMID:
21988797
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Discovery and validation of Barrett's esophagus microRNA transcriptome by next generation sequencing.

Bansal A, Lee IH, Hong X, Mathur SC, Tawfik O, Rastogi A, Buttar N, Visvanathan M, Sharma P, Christenson LK.

PLoS One. 2013;8(1):e54240. doi: 10.1371/journal.pone.0054240. Epub 2013 Jan 23.

PMID:
23372692
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Next-generation sequencing of the porcine skeletal muscle transcriptome for computational prediction of microRNA gene targets.

McDaneld TG, Smith TP, Harhay GP, Wiedmann RT.

PLoS One. 2012;7(7):e42039. doi: 10.1371/journal.pone.0042039. Epub 2012 Jul 27.

PMID:
22848698
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Dose-dependent differential mRNA target selection and regulation by let-7a-7f and miR-17-92 cluster microRNAs.

Shu J, Xia Z, Li L, Liang ET, Slipek N, Shen D, Foo J, Subramanian S, Steer CJ.

RNA Biol. 2012 Oct;9(10):1275-87. doi: 10.4161/rna.21998. Epub 2012 Sep 20.

PMID:
22995834
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A functional assay for microRNA target identification and validation.

Gäken J, Mohamedali AM, Jiang J, Malik F, Stangl D, Smith AE, Chronis C, Kulasekararaj AG, Thomas NS, Farzaneh F, Tavassoli M, Mufti GJ.

Nucleic Acids Res. 2012 May;40(10):e75. doi: 10.1093/nar/gks145. Epub 2012 Feb 9.

PMID:
22323518
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

PMID:
23163954
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.

PMID:
22799740
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation.

Xu F, Liu Q, Chen L, Kuang J, Walk T, Wang J, Liao H.

BMC Genomics. 2013 Jan 31;14:66. doi: 10.1186/1471-2164-14-66.

PMID:
23368765
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Viral microRNA target allows insight into the role of translation in governing microRNA target accessibility.

Lin HR, Ganem D.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5148-53. doi: 10.1073/pnas.1102033108. Epub 2011 Mar 14.

PMID:
21402938
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The impact of miRNA target sites in coding sequences and in 3'UTRs.

Fang Z, Rajewsky N.

PLoS One. 2011 Mar 22;6(3):e18067. doi: 10.1371/journal.pone.0018067.

PMID:
21445367
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes.

Bruno AE, Li L, Kalabus JL, Pan Y, Yu A, Hu Z.

BMC Genomics. 2012 Jan 25;13:44. doi: 10.1186/1471-2164-13-44.

PMID:
22276777
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Characterization of novel precursor miRNAs using next generation sequencing and prediction of miRNA targets in Atlantic halibut.

Bizuayehu TT, Fernandes JM, Johansen SD, Babiak I.

PLoS One. 2013 Apr 23;8(4):e61378. doi: 10.1371/journal.pone.0061378. Print 2013.

PMID:
23626677
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
[PubMed - indexed for MEDLINE]
16.

Transcriptome-wide prediction of miRNA targets in human and mouse using FASTH.

Ragan C, Cloonan N, Grimmond SM, Zuker M, Ragan MA.

PLoS One. 2009 May 29;4(5):e5745. doi: 10.1371/journal.pone.0005745. Erratum in: PLoS One. 2009;4(7). doi: 10.1371/annotation/e0842765-3cae-4737-8b5b-96aeb12d7fb5.

PMID:
19478946
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genetic architecture of microRNA expression: implications for the transcriptome and complex traits.

Gamazon ER, Ziliak D, Im HK, LaCroix B, Park DS, Cox NJ, Huang RS.

Am J Hum Genet. 2012 Jun 8;90(6):1046-63. doi: 10.1016/j.ajhg.2012.04.023. Epub 2012 May 31.

PMID:
22658545
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis.

Gong J, Tong Y, Zhang HM, Wang K, Hu T, Shan G, Sun J, Guo AY.

Hum Mutat. 2012 Jan;33(1):254-63. doi: 10.1002/humu.21641. Epub 2011 Nov 23.

PMID:
22045659
[PubMed - indexed for MEDLINE]
19.

Sequencing bias: comparison of different protocols of microRNA library construction.

Tian G, Yin X, Luo H, Xu X, Bolund L, Zhang X, Gan SQ, Li N.

BMC Biotechnol. 2010 Sep 6;10:64. doi: 10.1186/1472-6750-10-64. Erratum in: BMC Biotechnol. 2011;11:48. Gan, Shang-Quang [added]; Li, Ning [added].

PMID:
20815927
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcriptome-wide identification of microRNA targets in rice.

Li YF, Zheng Y, Addo-Quaye C, Zhang L, Saini A, Jagadeeswaran G, Axtell MJ, Zhang W, Sunkar R.

Plant J. 2010 Jun 1;62(5):742-59. doi: 10.1111/j.1365-313X.2010.04187.x. Epub 2010 Feb 26.

PMID:
20202174
[PubMed - indexed for MEDLINE]
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