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Results: 1 to 20 of 136

1.

Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function.

Lickwar CR, Mueller F, Hanlon SE, McNally JG, Lieb JD.

Nature. 2012 Apr 11;484(7393):251-5. doi: 10.1038/nature10985.

PMID:
22498630
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome.

Koerber RT, Rhee HS, Jiang C, Pugh BF.

Mol Cell. 2009 Sep 24;35(6):889-902. doi: 10.1016/j.molcel.2009.09.011.

PMID:
19782036
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A chromatin-mediated mechanism for specification of conditional transcription factor targets.

Buck MJ, Lieb JD.

Nat Genet. 2006 Dec;38(12):1446-51. Epub 2006 Nov 12.

PMID:
17099712
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Distinguishing direct versus indirect transcription factor-DNA interactions.

Gordân R, Hartemink AJ, Bulyk ML.

Genome Res. 2009 Nov;19(11):2090-100. doi: 10.1101/gr.094144.109. Epub 2009 Aug 3.

PMID:
19652015
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Global nucleosome occupancy in yeast.

Bernstein BE, Liu CL, Humphrey EL, Perlstein EO, Schreiber SL.

Genome Biol. 2004;5(9):R62. Epub 2004 Aug 20.

PMID:
15345046
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide analysis of transcriptional dependence and probable target sites for Abf1 and Rap1 in Saccharomyces cerevisiae.

Yarragudi A, Parfrey LW, Morse RH.

Nucleic Acids Res. 2007;35(1):193-202. Epub 2006 Dec 7.

PMID:
17158163
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4.

Zhou X, O'Shea EK.

Mol Cell. 2011 Jun 24;42(6):826-36. doi: 10.1016/j.molcel.2011.05.025.

PMID:
21700227
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.

Baller JA, Gao J, Stamenova R, Curcio MJ, Voytas DF.

Genome Res. 2012 Apr;22(4):704-13. doi: 10.1101/gr.129585.111. Epub 2012 Jan 4.

PMID:
22219511
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics.

Selth LA, Lorch Y, Ocampo-Hafalla MT, Mitter R, Shales M, Krogan NJ, Kornberg RD, Svejstrup JQ.

Mol Cell Biol. 2009 Aug;29(15):4220-34. doi: 10.1128/MCB.01882-08. Epub 2009 May 26.

PMID:
19470761
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The transcriptional repressor activator protein Rap1p is a direct regulator of TATA-binding protein.

Bendjennat M, Weil PA.

J Biol Chem. 2008 Mar 28;283(13):8699-710. doi: 10.1074/jbc.M709436200. Epub 2008 Jan 14.

PMID:
18195009
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Characterization of the yeast telomere nucleoprotein core: Rap1 binds independently to each recognition site.

Williams TL, Levy DL, Maki-Yonekura S, Yonekura K, Blackburn EH.

J Biol Chem. 2010 Nov 12;285(46):35814-24. doi: 10.1074/jbc.M110.170167. Epub 2010 Sep 7.

PMID:
20826803
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene expression: Running to stand still.

Kaplan T, Friedman N.

Nature. 2012 Apr 11;484(7393):171-2. doi: 10.1038/484171a. No abstract available.

PMID:
22498619
[PubMed - indexed for MEDLINE]
13.

Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae.

Yarragudi A, Miyake T, Li R, Morse RH.

Mol Cell Biol. 2004 Oct;24(20):9152-64.

PMID:
15456886
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast.

Sperling AS, Jeong KS, Kitada T, Grunstein M.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12693-8. doi: 10.1073/pnas.1106834108. Epub 2011 Jul 19.

PMID:
21771901
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast.

Afek A, Sela I, Musa-Lempel N, Lukatsky DB.

Biophys J. 2011 Nov 16;101(10):2465-75. doi: 10.1016/j.bpj.2011.10.012. Epub 2011 Nov 15.

PMID:
22098745
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.

Mason PB, Struhl K.

Mol Cell Biol. 2003 Nov;23(22):8323-33. Erratum in: Mol Cell Biol. 2004 Jul;24(14):6536.

PMID:
14585989
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Fine-structure analysis of ribosomal protein gene transcription.

Zhao Y, McIntosh KB, Rudra D, Schawalder S, Shore D, Warner JR.

Mol Cell Biol. 2006 Jul;26(13):4853-62.

PMID:
16782874
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide structure and organization of eukaryotic pre-initiation complexes.

Rhee HS, Pugh BF.

Nature. 2012 Jan 18;483(7389):295-301. doi: 10.1038/nature10799. Erratum in: Nature. 2012 Jul 5;487(7405):128.

PMID:
22258509
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Yeast Rap1 contributes to genomic integrity by activating DNA damage repair genes.

Tomar RS, Zheng S, Brunke-Reese D, Wolcott HN, Reese JC.

EMBO J. 2008 Jun 4;27(11):1575-84. doi: 10.1038/emboj.2008.93. Epub 2008 May 15.

PMID:
18480842
[PubMed - indexed for MEDLINE]
Free PMC Article

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