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Items: 1 to 20 of 123

1.

The design and cross-population application of a genome-wide SNP chip for the great tit Parus major.

Van Bers NE, Santure AW, Van Oers K, De Cauwer I, Dibbits BW, Mateman C, Crooijmans RP, Sheldon BC, Visser ME, Groenen MA, Slate J.

Mol Ecol Resour. 2012 Jul;12(4):753-70. doi: 10.1111/j.1755-0998.2012.03141.x. Epub 2012 Apr 5.

PMID:
22487530
2.

Genome-wide SNP detection in the great tit Parus major using high throughput sequencing.

van Bers NE, van Oers K, Kerstens HH, Dibbits BW, Crooijmans RP, Visser ME, Groenen MA.

Mol Ecol. 2010 Mar;19 Suppl 1:89-99. doi: 10.1111/j.1365-294X.2009.04486.x.

PMID:
20331773
3.

Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing.

Santure AW, Gratten J, Mossman JA, Sheldon BC, Slate J.

BMC Genomics. 2011 Jun 2;12:283. doi: 10.1186/1471-2164-12-283.

4.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

5.

Replicated analysis of the genetic architecture of quantitative traits in two wild great tit populations.

Santure AW, Poissant J, De Cauwer I, van Oers K, Robinson MR, Quinn JL, Groenen MA, Visser ME, Sheldon BC, Slate J.

Mol Ecol. 2015 Dec;24(24):6148-62. doi: 10.1111/mec.13452. Epub 2015 Dec 10.

6.

High-throughput genomics in sorghum: from whole-genome resequencing to a SNP screening array.

Bekele WA, Wieckhorst S, Friedt W, Snowdon RJ.

Plant Biotechnol J. 2013 Dec;11(9):1112-25. doi: 10.1111/pbi.12106. Epub 2013 Aug 7.

7.

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population.

Santure AW, De Cauwer I, Robinson MR, Poissant J, Sheldon BC, Slate J.

Mol Ecol. 2013 Aug;22(15):3949-62. doi: 10.1111/mec.12376.

PMID:
23889544
8.

High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EA, Tuberosa R.

Theor Appl Genet. 2011 Aug;123(4):555-69. doi: 10.1007/s00122-011-1607-7. Epub 2011 May 25.

PMID:
21611761
9.

Replicated high-density genetic maps of two great tit populations reveal fine-scale genomic departures from sex-equal recombination rates.

van Oers K, Santure AW, De Cauwer I, van Bers NE, Crooijmans RP, Sheldon BC, Visser ME, Slate J, Groenen MA.

Heredity (Edinb). 2014 Mar;112(3):307-16. doi: 10.1038/hdy.2013.107. Epub 2013 Oct 23.

10.

The easy road to genome-wide medium density SNP screening in a non-model species: development and application of a 10 K SNP-chip for the house sparrow (Passer domesticus).

Hagen IJ, Billing AM, Rønning B, Pedersen SA, Pärn H, Slate J, Jensen H.

Mol Ecol Resour. 2013 May;13(3):429-39. doi: 10.1111/1755-0998.12088. Epub 2013 Mar 9.

PMID:
23480404
11.

Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.

Djari A, Esquerré D, Weiss B, Martins F, Meersseman C, Boussaha M, Klopp C, Rocha D.

BMC Genomics. 2013 May 7;14:307. doi: 10.1186/1471-2164-14-307.

12.

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).

Ozerov M, Vasemägi A, Wennevik V, Niemelä E, Prusov S, Kent M, Vähä JP.

BMC Genomics. 2013 Jan 16;14:12. doi: 10.1186/1471-2164-14-12.

13.

Contrasting patterns of phenotypic plasticity in reproductive traits in two great tit (Parus major) populations.

Husby A, Nussey DH, Visser ME, Wilson AJ, Sheldon BC, Kruuk LE.

Evolution. 2010 Aug;64(8):2221-37. doi: 10.1111/j.1558-5646.2010.00991.x. Epub 2010 Mar 18.

PMID:
20298465
14.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

15.

Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome.

Backström N, Fagerberg S, Ellegren H.

Mol Ecol. 2008 Feb;17(4):964-80. Epub 2007 Oct 8.

PMID:
17927703
16.

Association between DRD4 gene polymorphism and personality variation in great tits: a test across four wild populations.

Korsten P, Mueller JC, Hermannstädter C, Bouwman KM, Dingemanse NJ, Drent PJ, Liedvogel M, Matthysen E, van Oers K, van Overveld T, Patrick SC, Quinn JL, Sheldon BC, Tinbergen JM, Kempenaers B.

Mol Ecol. 2010 Feb;19(4):832-43. doi: 10.1111/j.1365-294X.2009.04518.x. Epub 2010 Jan 11.

PMID:
20070517
17.

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms.

Greminger MP, Stölting KN, Nater A, Goossens B, Arora N, Bruggmann R, Patrignani A, Nussberger B, Sharma R, Kraus RH, Ambu LN, Singleton I, Chikhi L, van Schaik CP, Krützen M.

BMC Genomics. 2014 Jan 10;15:16. doi: 10.1186/1471-2164-15-16.

18.

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries.

Van Tassell CP, Smith TP, Matukumalli LK, Taylor JF, Schnabel RD, Lawley CT, Haudenschild CD, Moore SS, Warren WC, Sonstegard TS.

Nat Methods. 2008 Mar;5(3):247-52. doi: 10.1038/nmeth.1185. Epub 2008 Feb 24.

PMID:
18297082
19.

Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing.

De Donato M, Peters SO, Mitchell SE, Hussain T, Imumorin IG.

PLoS One. 2013 May 17;8(5):e62137. doi: 10.1371/journal.pone.0062137. Print 2013.

20.

Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.

Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espiñeira M, Atanassova M, Tinti F, Maes GE, Patarnello T; FishPopTrace Consortium, Bargelloni L.

PLoS One. 2011;6(11):e28008. doi: 10.1371/journal.pone.0028008. Epub 2011 Nov 22.

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