Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 105

1.

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq.

Haenni S, Ji Z, Hoque M, Rust N, Sharpe H, Eberhard R, Browne C, Hengartner MO, Mellor J, Tian B, Furger A.

Nucleic Acids Res. 2012 Jul;40(13):6304-18. Epub 2012 Mar 29.

2.

Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles.

Blazie SM, Babb C, Wilky H, Rawls A, Park JG, Mangone M.

BMC Biol. 2015 Jan 20;13:4. doi: 10.1186/s12915-015-0116-6.

3.

Formation, regulation and evolution of Caenorhabditis elegans 3'UTRs.

Jan CH, Friedman RC, Ruby JG, Bartel DP.

Nature. 2011 Jan 6;469(7328):97-101. doi: 10.1038/nature09616. Epub 2010 Nov 17.

4.

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

Shen Y, Venu RC, Nobuta K, Wu X, Notibala V, Demirci C, Meyers BC, Wang GL, Ji G, Li QQ.

Genome Res. 2011 Sep;21(9):1478-86. doi: 10.1101/gr.114744.110. Epub 2011 Aug 3.

5.

Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq.

Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, Shi Y.

RNA. 2011 Apr;17(4):761-72. doi: 10.1261/rna.2581711. Epub 2011 Feb 22.

6.

A quantitative atlas of polyadenylation in five mammals.

Derti A, Garrett-Engele P, Macisaac KD, Stevens RC, Sriram S, Chen R, Rohl CA, Johnson JM, Babak T.

Genome Res. 2012 Jun;22(6):1173-83. doi: 10.1101/gr.132563.111. Epub 2012 Mar 27.

7.

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation.

Hafez D, Ni T, Mukherjee S, Zhu J, Ohler U.

Bioinformatics. 2013 Jul 1;29(13):i108-16. doi: 10.1093/bioinformatics/btt233.

8.

The ELT-2 GATA-factor and the global regulation of transcription in the C. elegans intestine.

McGhee JD, Sleumer MC, Bilenky M, Wong K, McKay SJ, Goszczynski B, Tian H, Krich ND, Khattra J, Holt RA, Baillie DL, Kohara Y, Marra MA, Jones SJ, Moerman DG, Robertson AG.

Dev Biol. 2007 Feb 15;302(2):627-45. Epub 2006 Oct 21.

9.

Accurate mapping of cleavage and polyadenylation sites by 3' region extraction and deep sequencing.

Hoque M, Li W, Tian B.

Methods Mol Biol. 2014;1125:119-29. doi: 10.1007/978-1-62703-971-0_10.

PMID:
24590784
10.

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression.

Lianoglou S, Garg V, Yang JL, Leslie CS, Mayr C.

Genes Dev. 2013 Nov 1;27(21):2380-96. doi: 10.1101/gad.229328.113. Epub 2013 Oct 21.

11.

Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes.

Smith LM, Hartmann L, Drewe P, Bohnert R, Kahles A, Lanz C, R├Ątsch G.

RNA Biol. 2012 May;9(5):596-609. doi: 10.4161/rna.19683. Epub 2012 May 1.

PMID:
22614838
12.

Bioinformatics analysis of alternative polyadenylation in green alga Chlamydomonas reinhardtii using transcriptome sequences from three different sequencing platforms.

Zhao Z, Wu X, Kumar PK, Dong M, Ji G, Li QQ, Liang C.

G3 (Bethesda). 2014 Mar 13;4(5):871-83. doi: 10.1534/g3.114.010249.

13.

A multiplex RNA-seq strategy to profile poly(A+) RNA: application to analysis of transcription response and 3' end formation.

Fox-Walsh K, Davis-Turak J, Zhou Y, Li H, Fu XD.

Genomics. 2011 Oct;98(4):266-71. doi: 10.1016/j.ygeno.2011.04.003. Epub 2011 Apr 15.

14.
15.

Position-specific binding of FUS to nascent RNA regulates mRNA length.

Masuda A, Takeda J, Okuno T, Okamoto T, Ohkawara B, Ito M, Ishigaki S, Sobue G, Ohno K.

Genes Dev. 2015 May 15;29(10):1045-57. doi: 10.1101/gad.255737.114.

16.

Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome.

Lamm AT, Stadler MR, Zhang H, Gent JI, Fire AZ.

Genome Res. 2011 Feb;21(2):265-75. doi: 10.1101/gr.108845.110. Epub 2010 Dec 22.

17.

Massively parallel sequencing of the polyadenylated transcriptome of C. elegans.

Hillier LW, Reinke V, Green P, Hirst M, Marra MA, Waterston RH.

Genome Res. 2009 Apr;19(4):657-66. doi: 10.1101/gr.088112.108. Epub 2009 Jan 30.

18.

Analysis of alternative cleavage and polyadenylation by 3' region extraction and deep sequencing.

Hoque M, Ji Z, Zheng D, Luo W, Li W, You B, Park JY, Yehia G, Tian B.

Nat Methods. 2013 Feb;10(2):133-9. doi: 10.1038/nmeth.2288. Epub 2012 Dec 16.

19.

Alternative mRNA transcription, processing, and translation: insights from RNA sequencing.

de Klerk E, 't Hoen PA.

Trends Genet. 2015 Mar;31(3):128-39. doi: 10.1016/j.tig.2015.01.001. Epub 2015 Jan 30. Review.

PMID:
25648499
20.

Widespread and extensive lengthening of 3' UTRs in the mammalian brain.

Miura P, Shenker S, Andreu-Agullo C, Westholm JO, Lai EC.

Genome Res. 2013 May;23(5):812-25. doi: 10.1101/gr.146886.112. Epub 2013 Mar 21.

Items per page

Supplemental Content

Write to the Help Desk