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Items: 1 to 20 of 144

1.

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.

Adey A, Shendure J.

Genome Res. 2012 Jun;22(6):1139-43. doi: 10.1101/gr.136242.111. Epub 2012 Mar 30.

2.

Tagmentation-based whole-genome bisulfite sequencing.

Wang Q, Gu L, Adey A, Radlwimmer B, Wang W, Hovestadt V, Bähr M, Wolf S, Shendure J, Eils R, Plass C, Weichenhan D.

Nat Protoc. 2013 Oct;8(10):2022-32. doi: 10.1038/nprot.2013.118. Epub 2013 Sep 26.

PMID:
24071908
3.
4.

Whole methylome analysis by ultra-deep sequencing using two-base encoding.

Bormann Chung CA, Boyd VL, McKernan KJ, Fu Y, Monighetti C, Peckham HE, Barker M.

PLoS One. 2010 Feb 22;5(2):e9320. doi: 10.1371/journal.pone.0009320.

5.

Single nucleotide analysis of cytosine methylation by whole-genome shotgun bisulfite sequencing.

Johnson MD, Mueller M, Game L, Aitman TJ.

Curr Protoc Mol Biol. 2012 Jul;Chapter 21:Unit21.23. doi: 10.1002/0471142727.mb2123s99.

PMID:
22870857
6.

Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.

Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A.

Nat Protoc. 2011 Apr;6(4):468-81. doi: 10.1038/nprot.2010.190. Epub 2011 Mar 18.

PMID:
21412275
7.

Improved tagmentation-based whole-genome bisulfite sequencing for input DNA from less than 100 mammalian cells.

Lu H, Yuan Z, Tan T, Wang J, Zhang J, Luo HJ, Xia Y, Ji W, Gao F.

Epigenomics. 2015;7(1):47-56. doi: 10.2217/epi.14.76.

PMID:
25687465
9.

Enhanced reduced representation bisulfite sequencing for assessment of DNA methylation at base pair resolution.

Garrett-Bakelman FE, Sheridan CK, Kacmarczyk TJ, Ishii J, Betel D, Alonso A, Mason CE, Figueroa ME, Melnick AM.

J Vis Exp. 2015 Feb 24;(96):e52246. doi: 10.3791/52246.

10.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

11.

DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.

Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A.

Methods Mol Biol. 2009;507:177-87. doi: 10.1007/978-1-59745-522-0_14.

PMID:
18987815
12.

AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.

Chen J, Lutsik P, Akulenko R, Walter J, Helms V.

J Bioinform Comput Biol. 2014 Dec;12(6):1442005. doi: 10.1142/S0219720014420050.

PMID:
25553811
13.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

14.

Double restriction-enzyme digestion improves the coverage and accuracy of genome-wide CpG methylation profiling by reduced representation bisulfite sequencing.

Wang J, Xia Y, Li L, Gong D, Yao Y, Luo H, Lu H, Yi N, Wu H, Zhang X, Tao Q, Gao F.

BMC Genomics. 2013 Jan 16;14:11. doi: 10.1186/1471-2164-14-11.

15.

High-throughput bisulfite sequencing in mammalian genomes.

Smith ZD, Gu H, Bock C, Gnirke A, Meissner A.

Methods. 2009 Jul;48(3):226-32. doi: 10.1016/j.ymeth.2009.05.003. Epub 2009 May 12.

16.

Single-molecule polymerase chain reaction reduces bias: application to DNA methylation analysis by bisulfite sequencing.

Chhibber A, Schroeder BG.

Anal Biochem. 2008 Jun 1;377(1):46-54. doi: 10.1016/j.ab.2008.02.026. Epub 2008 Mar 4.

PMID:
18358818
17.

Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.

Varley KE, Mitra RD.

Genome Res. 2010 Sep;20(9):1279-87. doi: 10.1101/gr.101212.109. Epub 2010 Jul 13.

18.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

19.

A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling.

Clark C, Palta P, Joyce CJ, Scott C, Grundberg E, Deloukas P, Palotie A, Coffey AJ.

PLoS One. 2012;7(11):e50233. doi: 10.1371/journal.pone.0050233. Epub 2012 Nov 29.

20.

Bisulfite sequencing of cloned alleles.

Huang Z, Bassil CF, Murphy SK.

Methods Mol Biol. 2013;1049:83-94. doi: 10.1007/978-1-62703-547-7_8.

PMID:
23913211
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