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Results: 1 to 20 of 102

1.

Integrating phosphorylation network with transcriptional network reveals novel functional relationships.

Wang L, Hou L, Qian M, Deng M.

PLoS One. 2012;7(3):e33160. doi: 10.1371/journal.pone.0033160. Epub 2012 Mar 14.

PMID:
22432002
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Hog1 mitogen-activated protein kinase (MAPK) interrupts signal transduction between the Kss1 MAPK and the Tec1 transcription factor to maintain pathway specificity.

Shock TR, Thompson J, Yates JR 3rd, Madhani HD.

Eukaryot Cell. 2009 Apr;8(4):606-16. doi: 10.1128/EC.00005-09. Epub 2009 Feb 13.

PMID:
19218425
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions.

Venancio TM, Balaji S, Geetha S, Aravind L.

Mol Biosyst. 2010 Aug;6(8):1475-91. doi: 10.1039/c002567b. Epub 2010 Jun 2.

PMID:
20517567
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Functional organization of the S. cerevisiae phosphorylation network.

Fiedler D, Braberg H, Mehta M, Chechik G, Cagney G, Mukherjee P, Silva AC, Shales M, Collins SR, van Wageningen S, Kemmeren P, Holstege FC, Weissman JS, Keogh MC, Koller D, Shokat KM, Krogan NJ.

Cell. 2009 Mar 6;136(5):952-63. doi: 10.1016/j.cell.2008.12.039.

PMID:
19269370
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Refinement and expansion of signaling pathways: the osmotic response network in yeast.

Gat-Viks I, Shamir R.

Genome Res. 2007 Mar;17(3):358-67. Epub 2007 Jan 31.

PMID:
17267811
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs.

Sharifpoor S, van Dyk D, Costanzo M, Baryshnikova A, Friesen H, Douglas AC, Youn JY, VanderSluis B, Myers CL, Papp B, Boone C, Andrews BJ.

Genome Res. 2012 Apr;22(4):791-801. doi: 10.1101/gr.129213.111. Epub 2012 Jan 26.

PMID:
22282571
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Characterizing regulatory path motifs in integrated networks using perturbational data.

Joshi A, Van Parys T, Peer YV, Michoel T.

Genome Biol. 2010;11(3):R32. doi: 10.1186/gb-2010-11-3-r32. Epub 2010 Mar 11.

PMID:
20230615
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Regulation of the Saccharomyces cerevisiae Slt2 kinase pathway by the stress-inducible Sdp1 dual specificity phosphatase.

Hahn JS, Thiele DJ.

J Biol Chem. 2002 Jun 14;277(24):21278-84. Epub 2002 Mar 28.

PMID:
11923319
[PubMed - indexed for MEDLINE]
Free Article
9.

Unraveling condition specific gene transcriptional regulatory networks in Saccharomyces cerevisiae.

Kim H, Hu W, Kluger Y.

BMC Bioinformatics. 2006 Mar 21;7:165.

PMID:
16551355
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genetic reconstruction of a functional transcriptional regulatory network.

Hu Z, Killion PJ, Iyer VR.

Nat Genet. 2007 May;39(5):683-7. Epub 2007 Apr 8.

PMID:
17417638
[PubMed - indexed for MEDLINE]
11.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

PMID:
12399584
[PubMed - indexed for MEDLINE]
Free Article
12.

Refining current knowledge on the yeast FLR1 regulatory network by combined experimental and computational approaches.

Teixeira MC, Dias PJ, Monteiro PT, Sala A, Oliveira AL, Freitas AT, Sá-Correia I.

Mol Biosyst. 2010 Dec;6(12):2471-81. doi: 10.1039/c004881j. Epub 2010 Oct 11.

PMID:
20938527
[PubMed - indexed for MEDLINE]
13.

Understanding signaling in yeast: Insights from network analysis.

Arga KY, Onsan ZI, Kirdar B, Ulgen KO, Nielsen J.

Biotechnol Bioeng. 2007 Aug 1;97(5):1246-58.

PMID:
17252576
[PubMed - indexed for MEDLINE]
14.

Inferring a transcriptional regulatory network of the cytokinesis-related genes by network component analysis.

Chen SF, Juang YL, Chou WK, Lai JM, Huang CY, Kao CY, Wang FS.

BMC Syst Biol. 2009 Nov 27;3:110. doi: 10.1186/1752-0509-3-110.

PMID:
19943917
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The frequency dependence of osmo-adaptation in Saccharomyces cerevisiae.

Mettetal JT, Muzzey D, Gómez-Uribe C, van Oudenaarden A.

Science. 2008 Jan 25;319(5862):482-4. doi: 10.1126/science.1151582.

PMID:
18218902
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Zooming in on yeast osmoadaptation.

Kühn C, Klipp E.

Adv Exp Med Biol. 2012;736:293-310. doi: 10.1007/978-1-4419-7210-1_17. Review.

PMID:
22161336
[PubMed - indexed for MEDLINE]
17.

Genetic architecture of gene expression in the chicken.

Stanley D, Watson-Haigh NS, Cowled CJ, Moore RJ.

BMC Genomics. 2013 Jan 16;14:13. doi: 10.1186/1471-2164-14-13.

PMID:
23324119
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Structure and function of a transcriptional network activated by the MAPK Hog1.

Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK.

Nat Genet. 2008 Nov;40(11):1300-6. doi: 10.1038/ng.235. Epub 2008 Oct 19.

PMID:
18931682
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Global analysis of phosphorylation networks in humans.

Hu J, Rho HS, Newman RH, Hwang W, Neiswinger J, Zhu H, Zhang J, Qian J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):224-31. doi: 10.1016/j.bbapap.2013.03.009. Epub 2013 Mar 21.

PMID:
23524292
[PubMed - indexed for MEDLINE]
20.

Evolutionary rates and centrality in the yeast gene regulatory network.

Jovelin R, Phillips PC.

Genome Biol. 2009;10(4):R35. doi: 10.1186/gb-2009-10-4-r35. Epub 2009 Apr 9.

PMID:
19358738
[PubMed - indexed for MEDLINE]
Free PMC Article

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