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Items: 1 to 20 of 105

1.

Sequence evolution correlates with structural dynamics.

Liu Y, Bahar I.

Mol Biol Evol. 2012 Sep;29(9):2253-63. doi: 10.1093/molbev/mss097. Epub 2012 Mar 16.

2.

Protein promiscuity: drug resistance and native functions--HIV-1 case.

Fernández A, Tawfik DS, Berkhout B, Sanders R, Kloczkowski A, Sen T, Jernigan B.

J Biomol Struct Dyn. 2005 Jun;22(6):615-24.

PMID:
15842167
3.

Evolution of function in protein superfamilies, from a structural perspective.

Todd AE, Orengo CA, Thornton JM.

J Mol Biol. 2001 Apr 6;307(4):1113-43.

PMID:
11286560
4.
5.

Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies.

Chiang RA, Sali A, Babbitt PC.

PLoS Comput Biol. 2008 Aug 1;4(8):e1000142. doi: 10.1371/journal.pcbi.1000142.

6.

Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling.

Engelen S, Trojan LA, Sacquin-Mora S, Lavery R, Carbone A.

PLoS Comput Biol. 2009 Jan;5(1):e1000267. doi: 10.1371/journal.pcbi.1000267. Epub 2009 Jan 23.

7.

Structural position correlation analysis (SPCA) for protein family.

Du QS, Meng JZ, Wang CH, Long SY, Huang RB.

PLoS One. 2011;6(12):e28206. doi: 10.1371/journal.pone.0028206. Epub 2011 Dec 5.

9.

Protein fragments: functional and structural roles of their coevolution networks.

Dib L, Carbone A.

PLoS One. 2012;7(11):e48124. doi: 10.1371/journal.pone.0048124. Epub 2012 Nov 5.

10.

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

Caffrey DR, Somaroo S, Hughes JD, Mintseris J, Huang ES.

Protein Sci. 2004 Jan;13(1):190-202.

12.

Evolutionarily conserved networks of residues mediate allosteric communication in proteins.

Süel GM, Lockless SW, Wall MA, Ranganathan R.

Nat Struct Biol. 2003 Jan;10(1):59-69. Erratum in: Nat Struct Biol. 2003 Mar;10(3):232.

PMID:
12483203
13.

A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.

Baussand J, Carbone A.

PLoS Comput Biol. 2009 Sep;5(9):e1000488. doi: 10.1371/journal.pcbi.1000488. Epub 2009 Sep 4.

14.

ATPase subdomain IA is a mediator of interdomain allostery in Hsp70 molecular chaperones.

General IJ, Liu Y, Blackburn ME, Mao W, Gierasch LM, Bahar I.

PLoS Comput Biol. 2014 May 15;10(5):e1003624. doi: 10.1371/journal.pcbi.1003624. eCollection 2014 May.

15.

Analysis of evolutionary conservation patterns and their influence on identifying protein functional sites.

Fang C, Noguchi T, Yamana H.

J Bioinform Comput Biol. 2014 Oct;12(5):1440003. doi: 10.1142/S0219720014400034.

PMID:
25362840
16.

Functional specificity lies within the properties and evolutionary changes of amino acids.

Chakrabarti S, Bryant SH, Panchenko AR.

J Mol Biol. 2007 Oct 26;373(3):801-10. Epub 2007 Aug 22.

17.

Guided evolution of enzymes with new substrate specificities.

el Hawrani AS, Sessions RB, Moreton KM, Holbrook JJ.

J Mol Biol. 1996 Nov 22;264(1):97-110.

PMID:
8950270
18.

Analysis of catalytic residues in enzyme active sites.

Bartlett GJ, Porter CT, Borkakoti N, Thornton JM.

J Mol Biol. 2002 Nov 15;324(1):105-21.

PMID:
12421562
20.

Structural and functional restraints in the evolution of protein families and superfamilies.

Gong S, Worth CL, Bickerton GR, Lee S, Tanramluk D, Blundell TL.

Biochem Soc Trans. 2009 Aug;37(Pt 4):727-33. doi: 10.1042/BST0370727. Review.

PMID:
19614584
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