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Items: 1 to 20 of 75

1.

An approach to delineate primers for a group of poorly conserved sequences incorporating the common motif region.

Sahu M, Sahu J, Sahoo S, Dehury B, Sarma K, Sarmah R, Sen P, Modi MK, Barooah M.

Bioinformation. 2012;8(4):181-4. doi: 10.6026/97320630008181. Epub 2012 Feb 28.

2.

A new method for designing degenerate primers and its use in the identification of sequences in Brachiaria showing similarity to apomixis-associated genes.

Gorrón E, Rodríguez F, Bernal D, Rodriguez-Rojas LM, Bernal A, Restrepo S, Tohme J.

Bioinformatics. 2010 Aug 15;26(16):2053-4. doi: 10.1093/bioinformatics/btq312. Epub 2010 Jun 14.

3.

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.

4.

Amplification of orthologous genes using degenerate primers.

Chakravorty S, Vigoreaux JO.

Methods Mol Biol. 2010;634:175-85. doi: 10.1007/978-1-60761-652-8_13.

PMID:
20676984
5.

Genomic multiple sequence alignments: refinement using a genetic algorithm.

Wang C, Lefkowitz EJ.

BMC Bioinformatics. 2005 Aug 8;6:200.

6.

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.

7.

UniPrime2: a web service providing easier Universal Primer design.

Boutros R, Stokes N, Bekaert M, Teeling EC.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W209-13. doi: 10.1093/nar/gkp269. Epub 2009 Apr 28.

8.

CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design.

Rose TM, Henikoff JG, Henikoff S.

Nucleic Acids Res. 2003 Jul 1;31(13):3763-6.

9.

Role of the ruvB gene in homologous and homeologous recombination in Rhizobium etli.

Martinez-Salazar JM, Romero D.

Gene. 2000 Feb 8;243(1-2):125-31.

PMID:
10675620
10.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

11.

PrimerIdent: A web based tool for conserved primer design.

Pessoa AM, Pereira S, Teixeira J.

Bioinformation. 2010 Jul 6;5(2):52-4.

12.

Gene cloning using degenerate primers and genome walking.

Delgado JA, Meinhardt S, Markell SG, Goswami RS.

Methods Mol Biol. 2012;835:611-22. doi: 10.1007/978-1-61779-501-5_39.

PMID:
22183682
14.

Rhizobium tropici response to acidity involves activation of glutathione synthesis.

Muglia CI, Grasso DH, Aguilar OM.

Microbiology. 2007 Apr;153(Pt 4):1286-96.

PMID:
17379738
15.

Searching for nitrile hydratase using the Consensus-Degenerate Hybrid Oligonucleotide Primers strategy.

Lourenço PM, Almeida T, Mendonça D, Simões F, Novo C.

J Basic Microbiol. 2004;44(3):203-14.

PMID:
15162394
16.

Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences.

Polyanovsky VO, Roytberg MA, Tumanyan VG.

Algorithms Mol Biol. 2011 Oct 27;6(1):25. doi: 10.1186/1748-7188-6-25.

17.

COFFEE: an objective function for multiple sequence alignments.

Notredame C, Holm L, Higgins DG.

Bioinformatics. 1998 Jun;14(5):407-22.

18.

DATFAP: a database of primers and homology alignments for transcription factors from 13 plant species.

Fredslund J.

BMC Genomics. 2008 Mar 25;9:140. doi: 10.1186/1471-2164-9-140.

19.

Conserved nucleotide sequences at the 5' end of T cell receptor variable genes facilitate polymerase chain reaction amplification.

Broeren CP, Verjans GM, Van Eden W, Kusters JG, Lenstra JA, Logtenberg T.

Eur J Immunol. 1991 Mar;21(3):569-75.

PMID:
2009906
20.

Combining phylogenetic data with co-regulated genes to identify regulatory motifs.

Wang T, Stormo GD.

Bioinformatics. 2003 Dec 12;19(18):2369-80.

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