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Results: 1 to 20 of 113

1.

SAMSCOPE: an OpenGL-based real-time interactive scale-free SAM viewer.

Popendorf K, Sakakibara Y.

Bioinformatics. 2012 May 1;28(9):1276-7. doi: 10.1093/bioinformatics/bts122. Epub 2012 Mar 13.

PMID:
22419785
[PubMed - indexed for MEDLINE]
Free Article
2.

ABC: software for interactive browsing of genomic multiple sequence alignment data.

Cooper GM, Singaravelu SA, Sidow A.

BMC Bioinformatics. 2004 Dec 8;5:192.

PMID:
15588288
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The Sequence Alignment/Map format and SAMtools.

Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R; 1000 Genome Project Data Processing Subgroup.

Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.

PMID:
19505943
[PubMed - indexed for MEDLINE]
Free PMC Article
4.
5.

GenomeVISTA--an integrated software package for whole-genome alignment and visualization.

Poliakov A, Foong J, Brudno M, Dubchak I.

Bioinformatics. 2014 Sep 15;30(18):2654-5. doi: 10.1093/bioinformatics/btu355. Epub 2014 May 23.

PMID:
24860159
[PubMed - indexed for MEDLINE]
6.

Tablet--next generation sequence assembly visualization.

Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D.

Bioinformatics. 2010 Feb 1;26(3):401-2. doi: 10.1093/bioinformatics/btp666. Epub 2009 Dec 4.

PMID:
19965881
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rainbow: a toolbox for phylogenetic supertree construction and analysis.

Chen D, Eulenstein O, Fernández-Baca D.

Bioinformatics. 2004 Nov 1;20(16):2872-3. Epub 2004 May 14.

PMID:
15145807
[PubMed - indexed for MEDLINE]
Free Article
8.

DNAVis: interactive visualization of comparative genome annotations.

Fiers MW, van de Wetering H, Peeters TH, van Wijk JJ, Nap JP.

Bioinformatics. 2006 Feb 1;22(3):354-5. Epub 2005 Dec 6.

PMID:
16332715
[PubMed - indexed for MEDLINE]
Free Article
9.

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG.

Bioinformatics. 2007 Nov 1;23(21):2947-8. Epub 2007 Sep 10.

PMID:
17846036
[PubMed - indexed for MEDLINE]
Free Article
10.

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.

PMID:
16269416
[PubMed - indexed for MEDLINE]
Free Article
11.

Pegasys: software for executing and integrating analyses of biological sequences.

Shah SP, He DY, Sawkins JN, Druce JC, Quon G, Lett D, Zheng GX, Xu T, Ouellette BF.

BMC Bioinformatics. 2004 Apr 19;5:40.

PMID:
15096276
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

RALEE--RNA ALignment editor in Emacs.

Griffiths-Jones S.

Bioinformatics. 2005 Jan 15;21(2):257-9. Epub 2004 Sep 17.

PMID:
15377506
[PubMed - indexed for MEDLINE]
Free Article
13.

GenAlyzer: interactive visualization of sequence similarities between entire genomes.

Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R.

Bioinformatics. 2004 Aug 12;20(12):1964-5. Epub 2004 Feb 26.

PMID:
14988113
[PubMed - indexed for MEDLINE]
Free Article
14.

TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.

Milne I, Wright F, Rowe G, Marshall DF, Husmeier D, McGuire G.

Bioinformatics. 2004 Jul 22;20(11):1806-7. Epub 2004 Feb 26.

PMID:
14988107
[PubMed - indexed for MEDLINE]
Free Article
15.

Circular genome visualization and exploration using CGView.

Stothard P, Wishart DS.

Bioinformatics. 2005 Feb 15;21(4):537-9. Epub 2004 Oct 12.

PMID:
15479716
[PubMed - indexed for MEDLINE]
Free Article
16.

Genome visualization made fast and simple.

Gibson R, Smith DR.

Bioinformatics. 2003 Jul 22;19(11):1449-50.

PMID:
12874063
[PubMed - indexed for MEDLINE]
Free Article
17.

Open source clustering software.

de Hoon MJ, Imoto S, Nolan J, Miyano S.

Bioinformatics. 2004 Jun 12;20(9):1453-4. Epub 2004 Feb 10.

PMID:
14871861
[PubMed - indexed for MEDLINE]
Free Article
18.

JAtlasView: a Java atlas-viewer for browsing biomedical 3D images and atlases.

Feng G, Burton N, Hill B, Davidson D, Kerwin J, Scott M, Lindsay S, Baldock R.

BMC Bioinformatics. 2005 Mar 9;6:47.

PMID:
15757508
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

PMID:
15655071
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Paloverde: an OpenGL 3D phylogeny browser.

Sanderson MJ.

Bioinformatics. 2006 Apr 15;22(8):1004-6. Epub 2006 Feb 24.

PMID:
16500938
[PubMed - indexed for MEDLINE]
Free Article

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