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Items: 1 to 20 of 102

1.

Genomic variation in Salmonella enterica core genes for epidemiological typing.

Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW.

BMC Genomics. 2012 Mar 12;13:88. doi: 10.1186/1471-2164-13-88.

2.

Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0.

Laing C, Villegas A, Taboada EN, Kropinski A, Thomas JE, Gannon VP.

Infect Genet Evol. 2011 Dec;11(8):2151-61. doi: 10.1016/j.meegid.2011.09.021. Epub 2011 Oct 1.

PMID:
22001825
3.

Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.

Kaas RS, Friis C, Ussery DW, Aarestrup FM.

BMC Genomics. 2012 Oct 31;13:577. doi: 10.1186/1471-2164-13-577.

4.

MLST-v, multilocus sequence typing based on virulence genes, for molecular typing of Salmonella enterica subsp. enterica serovars.

Tankouo-Sandjong B, Sessitsch A, Liebana E, Kornschober C, Allerberger F, Hächler H, Bodrossy L.

J Microbiol Methods. 2007 Apr;69(1):23-36. Epub 2007 Jan 8.

PMID:
17208323
5.

Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.

Anjum MF, Marooney C, Fookes M, Baker S, Dougan G, Ivens A, Woodward MJ.

Infect Immun. 2005 Dec;73(12):7894-905.

6.

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM.

PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014.

7.

Population structure, origins and evolution of major Salmonella enterica clones.

Lan R, Reeves PR, Octavia S.

Infect Genet Evol. 2009 Sep;9(5):996-1005. doi: 10.1016/j.meegid.2009.04.011. Epub 2009 Apr 23. Review.

PMID:
19393770
8.

Association between phylogeny, virulence potential and serovars of Salmonella enterica.

Litrup E, Torpdahl M, Malorny B, Huehn S, Christensen H, Nielsen EM.

Infect Genet Evol. 2010 Oct;10(7):1132-9. doi: 10.1016/j.meegid.2010.07.015. Epub 2010 Jul 23.

PMID:
20656064
9.

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.

den Bakker HC, Moreno Switt AI, Govoni G, Cummings CA, Ranieri ML, Degoricija L, Hoelzer K, Rodriguez-Rivera LD, Brown S, Bolchacova E, Furtado MR, Wiedmann M.

BMC Genomics. 2011 Aug 22;12:425. doi: 10.1186/1471-2164-12-425.

10.

The Salmonella enterica pan-genome.

Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C.

Microb Ecol. 2011 Oct;62(3):487-504. doi: 10.1007/s00248-011-9880-1. Epub 2011 Jun 4. Review.

11.

DNA sequence-based subtyping and evolutionary analysis of selected Salmonella enterica serotypes.

Sukhnanand S, Alcaine S, Warnick LD, Su WL, Hof J, Craver MP, McDonough P, Boor KJ, Wiedmann M.

J Clin Microbiol. 2005 Aug;43(8):3688-98.

12.

Development of a custom 16S rRNA gene library for the identification and molecular subtyping of Salmonella enterica.

Hellberg RS, Haney CJ, Shen Y, Cheng CM, Williams-Hill DM, Martin WB.

J Microbiol Methods. 2012 Dec;91(3):448-58. doi: 10.1016/j.mimet.2012.09.018. Epub 2012 Sep 26.

PMID:
23022443
13.

Molecular genotyping of Salmonella enterica Abortusovis by pulsed field gel electrophoresis.

Dionisi AM, Carattoli A, Luzzi I, Magistrali C, Pezzotti G.

Vet Microbiol. 2006 Aug 25;116(1-3):217-23. Epub 2006 Apr 19.

PMID:
16624505
14.

Comparison of a semi-automated rep-PCR system and multilocus sequence typing for differentiation of Salmonella enterica isolates.

Ben-Darif E, De Pinna E, Threlfall EJ, Bolton FJ, Upton M, Fox AJ.

J Microbiol Methods. 2010 Apr;81(1):11-6. doi: 10.1016/j.mimet.2010.01.013. Epub 2010 Jan 28.

PMID:
20114063
15.

Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I.

Lienau EK, Blazar JM, Wang C, Brown EW, Stones R, Musser S, Allard MW.

PLoS One. 2013 Oct 28;8(10):e76821. doi: 10.1371/journal.pone.0076821. eCollection 2013.

16.

Pan-genomic analysis provides insights into the genomic variation and evolution of Salmonella Paratyphi A.

Liang W, Zhao Y, Chen C, Cui X, Yu J, Xiao J, Kan B.

PLoS One. 2012;7(9):e45346. doi: 10.1371/journal.pone.0045346. Epub 2012 Sep 19.

17.

Identification of genes to differentiate closely related Salmonella lineages.

Zou QH, Li RQ, Wang YJ, Liu SL.

PLoS One. 2013;8(2):e55988. doi: 10.1371/journal.pone.0055988. Epub 2013 Feb 18.

18.

Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains.

Wiesner M, Zaidi MB, Calva E, Fernández-Mora M, Calva JJ, Silva C.

BMC Microbiol. 2009 Jul 3;9:131. doi: 10.1186/1471-2180-9-131.

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