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Results: 1 to 20 of 112

Similar articles for PubMed (Select 22403033)

1.

Identification and properties of 1,119 candidate lincRNA loci in the Drosophila melanogaster genome.

Young RS, Marques AC, Tibbit C, Haerty W, Bassett AR, Liu JL, Ponting CP.

Genome Biol Evol. 2012;4(4):427-42. doi: 10.1093/gbe/evs020. Epub 2012 Mar 8.

2.

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

Chen ZX, Sturgill D, Qu J, Jiang H, Park S, Boley N, Suzuki AM, Fletcher AR, Plachetzki DC, FitzGerald PC, Artieri CG, Atallah J, Barmina O, Brown JB, Blankenburg KP, Clough E, Dasgupta A, Gubbala S, Han Y, Jayaseelan JC, Kalra D, Kim YA, Kovar CL, Lee SL, Li M, Malley JD, Malone JH, Mathew T, Mattiuzzo NR, Munidasa M, Muzny DM, Ongeri F, Perales L, Przytycka TM, Pu LL, Robinson G, Thornton RL, Saada N, Scherer SE, Smith HE, Vinson C, Warner CB, Worley KC, Wu YQ, Zou X, Cherbas P, Kellis M, Eisen MB, Piano F, Kionte K, Fitch DH, Sternberg PW, Cutter AD, Duff MO, Hoskins RA, Graveley BR, Gibbs RA, Bickel PJ, Kopp A, Carninci P, Celniker SE, Oliver B, Richards S.

Genome Res. 2014 Jul;24(7):1209-23. doi: 10.1101/gr.159384.113.

3.

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution.

Ulitsky I, Shkumatava A, Jan CH, Sive H, Bartel DP.

Cell. 2011 Dec 23;147(7):1537-50. doi: 10.1016/j.cell.2011.11.055. Erratum in: Cell. 2012 Oct 26;151(3):684-6.

4.

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.

Genes Dev. 2011 Sep 15;25(18):1915-27. doi: 10.1101/gad.17446611. Epub 2011 Sep 2.

5.

Identification of functional elements and regulatory circuits by Drosophila modENCODE.

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, Eaton ML, Landolin JM, Bristow CA, Ma L, Lin MF, Washietl S, Arshinoff BI, Ay F, Meyer PE, Robine N, Washington NL, Di Stefano L, Berezikov E, Brown CD, Candeias R, Carlson JW, Carr A, Jungreis I, Marbach D, Sealfon R, Tolstorukov MY, Will S, Alekseyenko AA, Artieri C, Booth BW, Brooks AN, Dai Q, Davis CA, Duff MO, Feng X, Gorchakov AA, Gu T, Henikoff JG, Kapranov P, Li R, MacAlpine HK, Malone J, Minoda A, Nordman J, Okamura K, Perry M, Powell SK, Riddle NC, Sakai A, Samsonova A, Sandler JE, Schwartz YB, Sher N, Spokony R, Sturgill D, van Baren M, Wan KH, Yang L, Yu C, Feingold E, Good P, Guyer M, Lowdon R, Ahmad K, Andrews J, Berger B, Brenner SE, Brent MR, Cherbas L, Elgin SC, Gingeras TR, Grossman R, Hoskins RA, Kaufman TC, Kent W, Kuroda MI, Orr-Weaver T, Perrimon N, Pirrotta V, Posakony JW, Ren B, Russell S, Cherbas P, Graveley BR, Lewis S, Micklem G, Oliver B, Park PJ, Celniker SE, Henikoff S, Karpen GH, Lai EC, MacAlpine DM, Stein LD, White KP, Kellis M.

Science. 2010 Dec 24;330(6012):1787-97. doi: 10.1126/science.1198374. Epub 2010 Dec 22.

6.

A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster.

Gao G, Vibranovski MD, Zhang L, Li Z, Liu M, Zhang YE, Li X, Zhang W, Fan Q, VanKuren NW, Long M, Wei L.

Genome Res. 2014 Apr;24(4):629-38. doi: 10.1101/gr.165837.113. Epub 2014 Jan 9.

7.

Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing.

Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y.

PLoS One. 2013 Aug 12;8(8):e70835. doi: 10.1371/journal.pone.0070835. eCollection 2013.

8.

Genetic and epigenetic regulation of human lincRNA gene expression.

Popadin K, Gutierrez-Arcelus M, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2013 Dec 5;93(6):1015-26. doi: 10.1016/j.ajhg.2013.10.022. Epub 2013 Nov 21.

9.

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness.

Marques AC, Ponting CP.

Genome Biol. 2009;10(11):R124. doi: 10.1186/gb-2009-10-11-r124. Epub 2009 Nov 6.

10.

Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster.

Holloway AK, Begun DJ, Siepel A, Pollard KS.

Genome Res. 2008 Oct;18(10):1592-601. doi: 10.1101/gr.077131.108. Epub 2008 Jun 26.

11.

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes.

Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP.

Genome Biol. 2010;11(7):R72. doi: 10.1186/gb-2010-11-7-r72. Epub 2010 Jul 12.

12.

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.

Tupy JL, Bailey AM, Dailey G, Evans-Holm M, Siebel CW, Misra S, Celniker SE, Rubin GM.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5495-500. Epub 2005 Apr 4. Erratum in: Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8392.

13.

A conserved long noncoding RNA affects sleep behavior in Drosophila.

Soshnev AA, Ishimoto H, McAllister BF, Li X, Wehling MD, Kitamoto T, Geyer PK.

Genetics. 2011 Oct;189(2):455-68. doi: 10.1534/genetics.111.131706. Epub 2011 Jul 20.

14.

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

Bergman CM, Pfeiffer BD, Rincón-Limas DE, Hoskins RA, Gnirke A, Mungall CJ, Wang AM, Kronmiller B, Pacleb J, Park S, Stapleton M, Wan K, George RA, de Jong PJ, Botas J, Rubin GM, Celniker SE.

Genome Biol. 2002;3(12):RESEARCH0086. Epub 2002 Dec 30.

15.

Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs.

Managadze D, Rogozin IB, Chernikova D, Shabalina SA, Koonin EV.

Genome Biol Evol. 2011;3:1390-404. doi: 10.1093/gbe/evr116. Epub 2011 Nov 9.

16.

Deficiency of X-linked inverted duplicates with male-biased expression and the underlying evolutionary mechanisms in the Drosophila genome.

Chen ZX, Zhang YE, Vibranovski M, Luo J, Gao G, Long M.

Mol Biol Evol. 2011 Oct;28(10):2823-32. doi: 10.1093/molbev/msr101. Epub 2011 May 5.

17.

Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs.

Zhou ZY, Li AM, Adeola AC, Liu YH, Irwin DM, Xie HB, Zhang YP.

Genome Biol Evol. 2014 Jun 2;6(6):1387-92. doi: 10.1093/gbe/evu113.

18.

Highly tissue specific expression of Sphinx supports its male courtship related role in Drosophila melanogaster.

Chen Y, Dai H, Chen S, Zhang L, Long M.

PLoS One. 2011 Apr 26;6(4):e18853. doi: 10.1371/journal.pone.0018853.

19.

Transposable elements reveal a stem cell-specific class of long noncoding RNAs.

Kelley D, Rinn J.

Genome Biol. 2012 Nov 26;13(11):R107. doi: 10.1186/gb-2012-13-11-r107.

20.

Purifying selection maintains highly conserved noncoding sequences in Drosophila.

Casillas S, Barbadilla A, Bergman CM.

Mol Biol Evol. 2007 Oct;24(10):2222-34. Epub 2007 Jul 23.

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