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Results: 1 to 20 of 101

1.

Coalescent-based DNA barcoding: multilocus analysis and robustness.

David O, Larédo C, Leblois R, Schaeffer B, Vergne N.

J Comput Biol. 2012 Mar;19(3):271-8. doi: 10.1089/cmb.2011.0122.

PMID:
22401591
[PubMed - indexed for MEDLINE]
2.

A simple 2D non-parametric resampling statistical approach to assess confidence in species identification in DNA barcoding--an alternative to likelihood and bayesian approaches.

Jin Q, He LJ, Zhang AB.

PLoS One. 2012;7(12):e50831. doi: 10.1371/journal.pone.0050831. Epub 2012 Dec 11.

PMID:
23239988
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNA barcoding and phylogenetic analysis of Pectinidae (Mollusca: Bivalvia) based on mitochondrial COI and 16S rRNA genes.

Feng Y, Li Q, Kong L, Zheng X.

Mol Biol Rep. 2011 Jan;38(1):291-9. doi: 10.1007/s11033-010-0107-1. Epub 2010 Mar 25.

PMID:
20336381
[PubMed - indexed for MEDLINE]
4.

A fuzzy-set-theory-based approach to analyse species membership in DNA barcoding.

Zhang AB, Muster C, Liang HB, Zhu CD, Crozier R, Wan P, Feng J, Ward RD.

Mol Ecol. 2012 Apr;21(8):1848-63. doi: 10.1111/j.1365-294X.2011.05235.x. Epub 2011 Aug 29.

PMID:
21883585
[PubMed - indexed for MEDLINE]
5.

The effect of sampling from subdivided populations on species identification with DNA barcodes using a Bayesian statistical approach.

Lou M, Golding GB.

Mol Phylogenet Evol. 2012 Nov;65(2):765-73. doi: 10.1016/j.ympev.2012.07.033. Epub 2012 Aug 11.

PMID:
22906810
[PubMed - indexed for MEDLINE]
6.

Classification of nucleotide sequences using support vector machines.

Seo TK.

J Mol Evol. 2010 Oct;71(4):250-67. doi: 10.1007/s00239-010-9380-9. Epub 2010 Aug 26.

PMID:
20740280
[PubMed - indexed for MEDLINE]
7.

Species identification in the taxonomically neglected, highly diverse, neotropical parasitoid wasp genus Notiospathius (Braconidae: Doryctinae) based on an integrative molecular and morphological approach.

Ceccarelli FS, Sharkey MJ, Zaldívar-Riverón A.

Mol Phylogenet Evol. 2012 Jan;62(1):485-95. doi: 10.1016/j.ympev.2011.10.018. Epub 2011 Nov 7.

PMID:
22079550
[PubMed - indexed for MEDLINE]
8.
9.

Identifying the true oysters (Bivalvia: Ostreidae) with mitochondrial phylogeny and distance-based DNA barcoding.

Liu J, Li Q, Kong L, Yu H, Zheng X.

Mol Ecol Resour. 2011 Sep;11(5):820-30. doi: 10.1111/j.1755-0998.2011.03025.x. Epub 2011 May 19.

PMID:
21592313
[PubMed - indexed for MEDLINE]
10.

Tropical montane nymphalids in Mexico: DNA barcodes reveal greater diversity.

Escalante P, Ibarra-Vazquez A, Rosas-Escobar P.

Mitochondrial DNA. 2010 Dec;21 Suppl 1:30-7. doi: 10.3109/19401736.2010.535527.

PMID:
21271856
[PubMed - indexed for MEDLINE]
11.

Bayesian species delimitation using multilocus sequence data.

Yang Z, Rannala B.

Proc Natl Acad Sci U S A. 2010 May 18;107(20):9264-9. doi: 10.1073/pnas.0913022107. Epub 2010 May 3.

PMID:
20439743
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification of rays through DNA barcoding: an application for ecologists.

Cerutti-Pereyra F, Meekan MG, Wei NW, O'Shea O, Bradshaw CJ, Austin CM.

PLoS One. 2012;7(6):e36479. doi: 10.1371/journal.pone.0036479. Epub 2012 Jun 11.

PMID:
22701556
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Phylogenetic and coalescent strategies of species delimitation in snubnose darters (Percidae: Etheostoma).

Harrington RC, Near TJ.

Syst Biol. 2012 Jan;61(1):63-79. doi: 10.1093/sysbio/syr077. Epub 2011 Aug 9.

PMID:
21828082
[PubMed - indexed for MEDLINE]
14.

DNA barcoding of billfishes.

Hanner R, Floyd R, Bernard A, Collette BB, Shivji M.

Mitochondrial DNA. 2011 Oct;22 Suppl 1:27-36. doi: 10.3109/19401736.2011.596833.

PMID:
21980985
[PubMed - indexed for MEDLINE]
15.

Aspergillus and Penicillium identification using DNA sequences: barcode or MLST?

Peterson SW.

Appl Microbiol Biotechnol. 2012 Jul;95(2):339-44. doi: 10.1007/s00253-012-4165-2. Epub 2012 May 27. Review.

PMID:
22639145
[PubMed - indexed for MEDLINE]
16.

Joining inventory by parataxonomists with DNA barcoding of a large complex tropical conserved wildland in northwestern Costa Rica.

Janzen DH, Hallwachs W.

PLoS One. 2011;6(8):e18123. doi: 10.1371/journal.pone.0018123. Epub 2011 Aug 16.

PMID:
21857894
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

DNA barcoding of Caenogastropoda along coast of China based on the COI gene.

Sun Y, Li Q, Kong L, Zheng X.

Mol Ecol Resour. 2012 Mar;12(2):209-18. doi: 10.1111/j.1755-0998.2011.03085.x. Epub 2011 Oct 31.

PMID:
22035191
[PubMed - indexed for MEDLINE]
18.

Statistical assignment of DNA sequences using Bayesian phylogenetics.

Munch K, Boomsma W, Huelsenbeck JP, Willerslev E, Nielsen R.

Syst Biol. 2008 Oct;57(5):750-7. doi: 10.1080/10635150802422316.

PMID:
18853361
[PubMed - indexed for MEDLINE]
19.

Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci.

Gill MS, Lemey P, Faria NR, Rambaut A, Shapiro B, Suchard MA.

Mol Biol Evol. 2013 Mar;30(3):713-24. doi: 10.1093/molbev/mss265. Epub 2012 Nov 22.

PMID:
23180580
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets.

Fujisawa T, Barraclough TG.

Syst Biol. 2013 Sep;62(5):707-24. doi: 10.1093/sysbio/syt033. Epub 2013 May 16.

PMID:
23681854
[PubMed - indexed for MEDLINE]
Free PMC Article

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