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Items: 1 to 20 of 70

1.

Development of genomic resources for Pacific Herring through targeted transcriptome pyrosequencing.

Roberts SB, Hauser L, Seeb LW, Seeb JE.

PLoS One. 2012;7(2):e30908. doi: 10.1371/journal.pone.0030908. Epub 2012 Feb 27.

2.

SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (Clupea harengus).

Helyar SJ, Limborg MT, Bekkevold D, Babbucci M, van Houdt J, Maes GE, Bargelloni L, Nielsen RO, Taylor MI, Ogden R, Cariani A, Carvalho GR; FishPopTrace Consortium, Panitz F.

PLoS One. 2012;7(8):e42089. doi: 10.1371/journal.pone.0042089. Epub 2012 Aug 7.

3.

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.

Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV.

BMC Genomics. 2009 May 12;10:219. doi: 10.1186/1471-2164-10-219.

4.

Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome.

Lemay MA, Henry P, Lamb CT, Robson KM, Russello MA.

BMC Genomics. 2013 May 10;14:311. doi: 10.1186/1471-2164-14-311.

5.

Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.

Seeb JE, Pascal CE, Grau ED, Seeb LW, Templin WD, Harkins T, Roberts SB.

Mol Ecol Resour. 2011 Mar;11(2):335-48. doi: 10.1111/j.1755-0998.2010.02936.x. Epub 2010 Nov 24.

PMID:
21429141
6.

Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.

Milano I, Babbucci M, Panitz F, Ogden R, Nielsen RO, Taylor MI, Helyar SJ, Carvalho GR, Espiñeira M, Atanassova M, Tinti F, Maes GE, Patarnello T; FishPopTrace Consortium, Bargelloni L.

PLoS One. 2011;6(11):e28008. doi: 10.1371/journal.pone.0028008. Epub 2011 Nov 22.

7.

[Preliminary data on variation of four microsatellite loci in Pacific herring Clupea pallasii].

Semenova AV, Andreeva AP, Stroganov AN, Rubtsova GA, Afanas'ev KI, Markevich GN, Smirnov AA.

Genetika. 2012 Jan;48(1):97-103. Russian.

PMID:
22567859
8.

Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3'UTR sequencing.

Koepke T, Schaeffer S, Krishnan V, Jiwan D, Harper A, Whiting M, Oraguzie N, Dhingra A.

BMC Genomics. 2012 Jan 12;13:18. doi: 10.1186/1471-2164-13-18.

9.

Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction.

Fu YB, Peterson GW.

Mol Ecol Resour. 2012 May;12(3):492-500. doi: 10.1111/j.1755-0998.2011.03100.x. Epub 2011 Dec 18.

PMID:
22177006
10.

[Phylogeography of pacific herring Clupea pallasii from Eurasian seas].

Gorbachev VV, Chernoivanova LA, Panfilova PN, Trofimov IK, Batanov RL, Chikilev VG, Bonk AA, Nekhaev IO, Solovenchuk LL, Vakatov AV.

Genetika. 2012 Sep;48(9):1091-7. Russian.

PMID:
23113337
11.

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.

Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA.

BMC Genomics. 2010 Mar 16;11:180. doi: 10.1186/1471-2164-11-180.

12.

Environmental selection on transcriptome-derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus).

Limborg MT, Helyar SJ, De Bruyn M, Taylor MI, Nielsen EE, Ogden R, Carvalho GR; FPT Consortium, Bekkevold D.

Mol Ecol. 2012 Aug;21(15):3686-703. doi: 10.1111/j.1365-294X.2012.05639.x. Epub 2012 Jun 13.

PMID:
22694661
13.

SNP discovery in swine by reduced representation and high throughput pyrosequencing.

Wiedmann RT, Smith TP, Nonneman DJ.

BMC Genet. 2008 Dec 4;9:81. doi: 10.1186/1471-2156-9-81.

15.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

16.

Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches.

Cheung F, Win J, Lang JM, Hamilton J, Vuong H, Leach JE, Kamoun S, André Lévesque C, Tisserat N, Buell CR.

BMC Genomics. 2008 Nov 15;9:542. doi: 10.1186/1471-2164-9-542.

17.

SNP discovery in non-model organisms using 454 next generation sequencing.

Wheat CW.

Methods Mol Biol. 2012;888:33-53. doi: 10.1007/978-1-61779-870-2_3.

PMID:
22665274
18.

Incorporating covariates into fisheries stock assessment models with application to Pacific herring.

Deriso RB, Maunder MN, Pearson WH.

Ecol Appl. 2008 Jul;18(5):1270-86.

PMID:
18686586
19.

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.

Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.

BMC Genomics. 2008 Jun 30;9:312. doi: 10.1186/1471-2164-9-312.

20.

Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa.

Scaglione D, Lanteri S, Acquadro A, Lai Z, Knapp SJ, Rieseberg L, Portis E.

Plant Biotechnol J. 2012 Oct;10(8):956-69. doi: 10.1111/j.1467-7652.2012.00725.x. Epub 2012 Jul 31.

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