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Items: 1 to 20 of 164

1.

Epigenetic regulation of human cis-natural antisense transcripts.

Conley AB, Jordan IK.

Nucleic Acids Res. 2012 Feb;40(4):1438-45. doi: 10.1093/nar/gkr1010.

2.

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

Jin H, Vacic V, Girke T, Lonardi S, Zhu JK.

BMC Mol Biol. 2008 Jan 14;9:6. doi: 10.1186/1471-2199-9-6.

3.

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U.

Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1.

4.

Protein-coding cis-natural antisense transcripts have high and broad expression in Arabidopsis.

Zhan S, Lukens L.

Plant Physiol. 2013 Apr;161(4):2171-80. doi: 10.1104/pp.112.212100. Epub 2013 Mar 1.

5.

Integrative genome-wide chromatin signature analysis using finite mixture models.

Taslim C, Lin S, Huang K, Huang TH.

BMC Genomics. 2012;13 Suppl 6:S3. doi: 10.1186/1471-2164-13-S6-S3. Epub 2012 Oct 26.

6.

DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus.

Baranello L, Bertozzi D, Fogli MV, Pommier Y, Capranico G.

Nucleic Acids Res. 2010 Jan;38(1):159-71. doi: 10.1093/nar/gkp817. Epub 2009 Oct 23.

7.
8.

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, Hernandez N, Naef F; CycliX Consortium.

PLoS Biol. 2012;10(11):e1001442. doi: 10.1371/journal.pbio.1001442. Epub 2012 Nov 27.

9.

AS1DHRS4, a head-to-head natural antisense transcript, silences the DHRS4 gene cluster in cis and trans.

Li Q, Su Z, Xu X, Liu G, Song X, Wang R, Sui X, Liu T, Chang X, Huang D.

Proc Natl Acad Sci U S A. 2012 Aug 28;109(35):14110-5. doi: 10.1073/pnas.1116597109. Epub 2012 Aug 13.

10.

Genome-wide view of natural antisense transcripts in Arabidopsis thaliana.

Yuan C, Wang J, Harrison AP, Meng X, Chen D, Chen M.

DNA Res. 2015 Jun;22(3):233-43. doi: 10.1093/dnares/dsv008. Epub 2015 Apr 28.

11.

The association between H3K4me3 and antisense transcription.

Cui P, Liu W, Zhao Y, Lin Q, Ding F, Xin C, Geng J, Song S, Sun F, Hu S, Yu J.

Genomics Proteomics Bioinformatics. 2012 Apr;10(2):74-81. doi: 10.1016/j.gpb.2012.05.001. Epub 2012 Jun 9.

12.

Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.

Lu T, Zhu C, Lu G, Guo Y, Zhou Y, Zhang Z, Zhao Y, Li W, Lu Y, Tang W, Feng Q, Han B.

BMC Genomics. 2012 Dec 22;13:721. doi: 10.1186/1471-2164-13-721.

13.

RNA polymerase II binding patterns reveal genomic regions involved in microRNA gene regulation.

Wang G, Wang Y, Shen C, Huang YW, Huang K, Huang TH, Nephew KP, Li L, Liu Y.

PLoS One. 2010 Nov 2;5(11):e13798. doi: 10.1371/journal.pone.0013798.

14.

Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa.

Yu X, Yang J, Li X, Liu X, Sun C, Wu F, He Y.

BMC Plant Biol. 2013 Dec 10;13:208. doi: 10.1186/1471-2229-13-208.

15.

The distribution and evolution of Arabidopsis thaliana cis natural antisense transcripts.

Bouchard J, Oliver C, Harrison PM.

BMC Genomics. 2015 Jun 9;16:444. doi: 10.1186/s12864-015-1587-0.

16.

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa.

Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W.

Genome Res. 2009 Jan;19(1):70-8. doi: 10.1101/gr.084806.108. Epub 2008 Oct 29.

17.

Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.

Kratz A, Arner E, Saito R, Kubosaki A, Kawai J, Suzuki H, Carninci P, Arakawa T, Tomita M, Hayashizaki Y, Daub CO.

BMC Genomics. 2010 Apr 21;11:257. doi: 10.1186/1471-2164-11-257.

18.

RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts.

Anamika K, Gyenis À, Poidevin L, Poch O, Tora L.

PLoS One. 2012;7(6):e38769. doi: 10.1371/journal.pone.0038769. Epub 2012 Jun 11.

19.

Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts.

Magistri M, Faghihi MA, St Laurent G 3rd, Wahlestedt C.

Trends Genet. 2012 Aug;28(8):389-96. doi: 10.1016/j.tig.2012.03.013. Epub 2012 Apr 26. Review.

20.

Cardiac myosin heavy chain gene regulation by thyroid hormone involves altered histone modifications.

Haddad F, Jiang W, Bodell PW, Qin AX, Baldwin KM.

Am J Physiol Heart Circ Physiol. 2010 Dec;299(6):H1968-80. doi: 10.1152/ajpheart.00644.2010. Epub 2010 Sep 10.

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