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Items: 1 to 20 of 114

1.

Characterization and taxonomic validity of the ciliate Oxytricha trifallax (Class Spirotrichea) based on multiple gene sequences: limitations in identifying genera solely by morphology.

Zoller SD, Hammersmith RL, Swart EC, Higgins BP, Doak TG, Herrick G, Landweber LF.

Protist. 2012 Jul;163(4):643-57. doi: 10.1016/j.protis.2011.12.006. Epub 2012 Feb 9.

2.

Selection on the protein-coding genes of the TBE1 family of transposable elements in the ciliates Oxytricha fallax and O. trifallax.

Witherspoon DJ, Doak TG, Williams KR, Seegmiller A, Seger J, Herrick G.

Mol Biol Evol. 1997 Jul;14(7):696-706.

3.

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF.

PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29.

6.

Morphology and phylogenetic analysis of two oxytrichid soil ciliates from China, Oxytricha paragranulifera n. sp. and Oxytricha granulifera Foissner and Adam, 1983 (Protista, Ciliophora, Hypotrichia).

Shao C, Lv Z, Pan Y, Al-Rasheid KA, Yi Z.

Int J Syst Evol Microbiol. 2014 Sep;64(Pt 9):3016-27. doi: 10.1099/ijs.0.062281-0. Epub 2014 Jun 13.

PMID:
24928427
7.

Sequence features of Oxytricha trifallax (class Spirotrichea) macronuclear telomeric and subtelomeric sequences.

Cavalcanti AR, Dunn DM, Weiss R, Herrick G, Landweber LF, Doak TG.

Protist. 2004 Sep;155(3):311-22.

PMID:
15552058
8.

Evolution of the scrambled germline gene encoding alpha-telomere binding protein in three hypotrichous ciliates.

Prescott JD, DuBois ML, Prescott DM.

Chromosoma. 1998 Nov;107(5):293-303.

PMID:
9880762
10.

Coding properties of Oxytricha trifallax (Sterkiella histriomuscorum) macronuclear chromosomes: analysis of a pilot genome project.

Cavalcanti AR, Stover NA, Orecchia L, Doak TG, Landweber LF.

Chromosoma. 2004 Sep;113(2):69-76. Epub 2004 Jul 16.

PMID:
15258807
11.

Systematics and species-specific response to pH of Oxytricha acidotolerans sp. nov. and Urosomoida sp. (Ciliophora, Hypotricha) from acid mining lakes.

Weisse T, Moser M, Scheffel U, Stadler P, Berendonk T, Weithoff G, Berger H.

Eur J Protistol. 2013 May;49(2):255-71. doi: 10.1016/j.ejop.2012.08.001. Epub 2012 Sep 26.

12.

Internal eliminated sequences interrupting the Oxytricha 81 locus: allelic divergence, conservation, conversions, and possible transposon origins.

Seegmiller A, Williams KR, Hammersmith RL, Doak TG, Witherspoon D, Messick T, Storjohann LL, Herrick G.

Mol Biol Evol. 1996 Dec;13(10):1351-62.

13.

The Oxytricha trifallax mitochondrial genome.

Swart EC, Nowacki M, Shum J, Stiles H, Higgins BP, Doak TG, Schotanus K, Magrini VJ, Minx P, Mardis ER, Landweber LF.

Genome Biol Evol. 2012;4(2):136-54. doi: 10.1093/gbe/evr136. Epub 2011 Dec 16.

14.

Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes.

Jung S, Swart EC, Minx PJ, Magrini V, Mardis ER, Landweber LF, Eddy SR.

Nucleic Acids Res. 2011 Sep 1;39(17):7529-47. doi: 10.1093/nar/gkr501. Epub 2011 Jun 28.

15.

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.

Bracht JR, Perlman DH, Landweber LF.

Genome Biol. 2012 Oct 17;13(10):R99. doi: 10.1186/gb-2012-13-10-r99.

16.

Scrambling of the actin I gene in two Oxytricha species.

DuBois M, Prescott DM.

Proc Natl Acad Sci U S A. 1995 Apr 25;92(9):3888-92.

17.

RNA-mediated epigenetic programming of a genome-rearrangement pathway.

Nowacki M, Vijayan V, Zhou Y, Schotanus K, Doak TG, Landweber LF.

Nature. 2008 Jan 10;451(7175):153-8. Epub 2007 Nov 28.

19.

Copy number variations of 11 macronuclear chromosomes and their gene expression in Oxytricha trifallax.

Xu K, Doak TG, Lipps HJ, Wang J, Swart EC, Chang WJ.

Gene. 2012 Aug 15;505(1):75-80. doi: 10.1016/j.gene.2012.05.045. Epub 2012 Jun 2.

PMID:
22669045
20.

Scrambled actin I gene in the micronucleus of Oxytricha nova.

Prescott DM, Greslin AF.

Dev Genet. 1992;13(1):66-74.

PMID:
1395144
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