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Results: 1 to 20 of 102

1.

Crystallographic analysis of small ribozymes and riboswitches.

Lippa GM, Liberman JA, Jenkins JL, Krucinska J, Salim M, Wedekind JE.

Methods Mol Biol. 2012;848:159-84. doi: 10.1007/978-1-61779-545-9_11.

PMID:
22315069
[PubMed - indexed for MEDLINE]
2.

Base ionization and ligand binding: how small ribozymes and riboswitches gain a foothold in a protein world.

Liberman JA, Wedekind JE.

Curr Opin Struct Biol. 2011 Jun;21(3):327-34. doi: 10.1016/j.sbi.2011.03.016. Epub 2011 Apr 27. Review.

PMID:
21530235
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Kinetic characterization of hairpin ribozyme variants.

Appel B, Marschall T, Strahl A, Müller S.

Methods Mol Biol. 2012;848:41-59. doi: 10.1007/978-1-61779-545-9_4.

PMID:
22315062
[PubMed - indexed for MEDLINE]
4.

Metabolite-binding ribozymes.

Ramesh A, Winkler WC.

Biochim Biophys Acta. 2014 Oct;1839(10):989-994. doi: 10.1016/j.bbagrm.2014.04.015. Epub 2014 Apr 24. Review.

PMID:
24769284
[PubMed - as supplied by publisher]
5.

Metal ion binding and function in natural and artificial small RNA enzymes from a structural perspective.

Wedekind JE.

Met Ions Life Sci. 2011;9:299-345. Review.

PMID:
22010277
[PubMed - indexed for MEDLINE]
6.

Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.

Jenkins JL, Krucinska J, McCarty RM, Bandarian V, Wedekind JE.

J Biol Chem. 2011 Jul 15;286(28):24626-37. doi: 10.1074/jbc.M111.230375. Epub 2011 May 18.

PMID:
21592962
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The dynamic nature of RNA as key to understanding riboswitch mechanisms.

Haller A, Soulière MF, Micura R.

Acc Chem Res. 2011 Dec 20;44(12):1339-48. doi: 10.1021/ar200035g. Epub 2011 Jun 16.

PMID:
21678902
[PubMed - indexed for MEDLINE]
8.

Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs.

Ferré-D'Amaré AR.

Methods. 2010 Oct;52(2):159-67. doi: 10.1016/j.ymeth.2010.06.008. Epub 2010 Jun 8. Review.

PMID:
20554048
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Comparison of solution and crystal structures of preQ1 riboswitch reveals calcium-induced changes in conformation and dynamics.

Zhang Q, Kang M, Peterson RD, Feigon J.

J Am Chem Soc. 2011 Apr 13;133(14):5190-3. doi: 10.1021/ja111769g. Epub 2011 Mar 16.

PMID:
21410253
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bacterial gene regulation: from transcription attenuation to riboswitches and ribozymes.

Brantl S.

Trends Microbiol. 2004 Nov;12(11):473-5.

PMID:
15488385
[PubMed - indexed for MEDLINE]
11.

A comparison of vanadate to a 2'-5' linkage at the active site of a small ribozyme suggests a role for water in transition-state stabilization.

Torelli AT, Krucinska J, Wedekind JE.

RNA. 2007 Jul;13(7):1052-70. Epub 2007 May 8.

PMID:
17488874
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Trans-acting glmS catalytic riboswitch: locked and loaded.

Tinsley RA, Furchak JR, Walter NG.

RNA. 2007 Apr;13(4):468-77. Epub 2007 Feb 5.

PMID:
17283212
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Exploring ribozyme conformational changes with X-ray crystallography.

Spitale RC, Wedekind JE.

Methods. 2009 Oct;49(2):87-100. doi: 10.1016/j.ymeth.2009.06.003. Epub 2009 Jun 24. Review.

PMID:
19559088
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The many faces of the hairpin ribozyme: structural and functional variants of a small catalytic RNA.

Müller S, Appel B, Krellenberg T, Petkovic S.

IUBMB Life. 2012 Jan;64(1):36-47. doi: 10.1002/iub.575. Epub 2011 Nov 30. Review.

PMID:
22131309
[PubMed - indexed for MEDLINE]
15.

Selecting allosteric ribozymes.

Piganeau N.

Methods Mol Biol. 2012;848:317-28. doi: 10.1007/978-1-61779-545-9_19.

PMID:
22315077
[PubMed - indexed for MEDLINE]
16.

Preparation and crystallization of riboswitch-ligand complexes.

Pikovskaya O, Serganov AA, Polonskaia A, Serganov A, Patel DJ.

Methods Mol Biol. 2009;540:115-28. doi: 10.1007/978-1-59745-558-9_9.

PMID:
19381556
[PubMed - indexed for MEDLINE]
17.

Enhanced folding of hairpin ribozymes with replaced domains.

Komatsu Y, Kanzaki I, Ohtsuka E.

Biochemistry. 1996 Jul 30;35(30):9815-20.

PMID:
8703955
[PubMed - indexed for MEDLINE]
18.

Crystallization of the hairpin ribozyme: illustrative protocols.

Rupert PB, Ferré-D'Amaré AR.

Methods Mol Biol. 2004;252:303-11.

PMID:
15017059
[PubMed - indexed for MEDLINE]
19.

Exploiting preQ(1) riboswitches to regulate ribosomal frameshifting.

Yu CH, Luo J, Iwata-Reuyl D, Olsthoorn RC.

ACS Chem Biol. 2013 Apr 19;8(4):733-40. doi: 10.1021/cb300629b. Epub 2013 Jan 25.

PMID:
23327288
[PubMed - indexed for MEDLINE]
20.

New catalytic structures from an existing ribozyme.

Curtis EA, Bartel DP.

Nat Struct Mol Biol. 2005 Nov;12(11):994-1000.

PMID:
16228005
[PubMed - indexed for MEDLINE]
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