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Items: 1 to 20 of 101

1.

Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer.

Itoh M, Kojima M, Nagao-Sato S, Saijo E, Lassmann T, Kanamori-Katayama M, Kaiho A, Lizio M, Kawaji H, Carninci P, Forrest AR, Hayashizaki Y.

PLoS One. 2012;7(1):e30809. doi: 10.1371/journal.pone.0030809. Epub 2012 Jan 30.

2.

Semi-automated library preparation for high-throughput DNA sequencing platforms.

Farias-Hesson E, Erikson J, Atkins A, Shen P, Davis RW, Scharfe C, Pourmand N.

J Biomed Biotechnol. 2010;2010:617469. doi: 10.1155/2010/617469. Epub 2010 Jun 8.

3.

Increased throughput by parallelization of library preparation for massive sequencing.

Lundin S, Stranneheim H, Pettersson E, Klevebring D, Lundeberg J.

PLoS One. 2010 Apr 6;5(4):e10029. doi: 10.1371/journal.pone.0010029.

4.

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing.

Kawaji H, Lizio M, Itoh M, Kanamori-Katayama M, Kaiho A, Nishiyori-Sueki H, Shin JW, Kojima-Ishiyama M, Kawano M, Murata M, Ninomiya-Fukuda N, Ishikawa-Kato S, Nagao-Sato S, Noma S, Hayashizaki Y, Forrest AR, Carninci P; FANTOM Consortium.

Genome Res. 2014 Apr;24(4):708-17. doi: 10.1101/gr.156232.113. Epub 2014 Mar 27.

5.

Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer.

Maeda N, Nishiyori H, Nakamura M, Kawazu C, Murata M, Sano H, Hayashida K, Fukuda S, Tagami M, Hasegawa A, Murakami K, Schroder K, Irvine K, Hume D, Hayashizaki Y, Carninci P, Suzuki H.

Biotechniques. 2008 Jul;45(1):95-7. doi: 10.2144/000112814.

6.

Unamplified cap analysis of gene expression on a single-molecule sequencer.

Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, Bertin N, Kaiho A, Ninomiya N, Daub CO, Carninci P, Forrest AR, Hayashizaki Y.

Genome Res. 2011 Jul;21(7):1150-9. doi: 10.1101/gr.115469.110. Epub 2011 May 19.

7.

RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer.

Shibata K, Itoh M, Aizawa K, Nagaoka S, Sasaki N, Carninci P, Konno H, Akiyama J, Nishi K, Kitsunai T, Tashiro H, Itoh M, Sumi N, Ishii Y, Nakamura S, Hazama M, Nishine T, Harada A, Yamamoto R, Matsumoto H, Sakaguchi S, Ikegami T, Kashiwagi K, Fujiwake S, Inoue K, Togawa Y.

Genome Res. 2000 Nov;10(11):1757-71.

8.

Automation of cDNA synthesis and labelling improves reproducibility.

Klevebring D, Gry M, Lindberg J, Eidefors A, Lundeberg J.

J Biomed Biotechnol. 2009;2009:396808. doi: 10.1155/2009/396808. Epub 2009 Oct 15.

9.
10.

Scalable transcriptome preparation for massive parallel sequencing.

Stranneheim H, Werne B, Sherwood E, Lundeberg J.

PLoS One. 2011;6(7):e21910. doi: 10.1371/journal.pone.0021910. Epub 2011 Jul 7.

11.

Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries.

Sugahara Y, Carninci P, Itoh M, Shibata K, Konno H, Endo T, Muramatsu M, Hayashizaki Y.

Gene. 2001 Jan 24;263(1-2):93-102.

PMID:
11223247
12.

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing.

Takahashi H, Lassmann T, Murata M, Carninci P.

Nat Protoc. 2012 Feb 23;7(3):542-61. doi: 10.1038/nprot.2012.005.

13.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

14.

Construction of RNA-Seq libraries from large and microscopic tissues for the Illumina sequencing platform.

Atamian HS, Kaloshian I.

Methods Mol Biol. 2012;883:47-57. doi: 10.1007/978-1-61779-839-9_3.

PMID:
22589123
15.

High-resolution analysis of the 5'-end transcriptome using a next generation DNA sequencer.

Hashimoto S, Qu W, Ahsan B, Ogoshi K, Sasaki A, Nakatani Y, Lee Y, Ogawa M, Ametani A, Suzuki Y, Sugano S, Lee CC, Nutter RC, Morishita S, Matsushima K.

PLoS One. 2009;4(1):e4108. doi: 10.1371/journal.pone.0004108. Epub 2009 Jan 1.

16.

A microfluidic DNA library preparation platform for next-generation sequencing.

Kim H, Jebrail MJ, Sinha A, Bent ZW, Solberg OD, Williams KP, Langevin SA, Renzi RF, Van De Vreugde JL, Meagher RJ, Schoeniger JS, Lane TW, Branda SS, Bartsch MS, Patel KD.

PLoS One. 2013 Jul 22;8(7):e68988. doi: 10.1371/journal.pone.0068988. Print 2013.

17.

Rapid identification of novel human lymphoid-restricted genes by automated DNA sequencing of subtracted cDNA libraries.

Staudt LM, Dent A, Ma C, Allman D, Powell J, Maile R, Scherle P, Behrens T.

Curr Top Microbiol Immunol. 1995;194:155-61. No abstract available.

PMID:
7895489
18.

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE.

Faulkner GJ, Forrest AR, Chalk AM, Schroder K, Hayashizaki Y, Carninci P, Hume DA, Grimmond SM.

Genomics. 2008 Mar;91(3):281-8. doi: 10.1016/j.ygeno.2007.11.003.

19.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
20.

Methods for generating shotgun and mixed shotgun/paired-end libraries for the 454 DNA sequencer.

Wiley G, Macmil S, Qu C, Wang P, Xing Y, White D, Li J, White JD, Domingo A, Roe BA.

Curr Protoc Hum Genet. 2009 Apr;Chapter 18:Unit18.1. doi: 10.1002/0471142905.hg1801s61.

PMID:
19360698
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