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Results: 1 to 20 of 83

Similar articles for PubMed (Select 22303379)

1.

On detecting selective sweeps using single genomes.

Sinha P, Dincer A, Virgil D, Xu G, Poh YP, Jensen JD.

Front Genet. 2011 Dec 1;2:85. doi: 10.3389/fgene.2011.00085. eCollection 2011.

2.

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

Burgess R, Yang Z.

Mol Biol Evol. 2008 Sep;25(9):1979-94. doi: 10.1093/molbev/msn148. Epub 2008 Jul 4.

3.

Human and non-human primate genomes share hotspots of positive selection.

Enard D, Depaulis F, Roest Crollius H.

PLoS Genet. 2010 Feb 5;6(2):e1000840. doi: 10.1371/journal.pgen.1000840.

4.

SweeD: likelihood-based detection of selective sweeps in thousands of genomes.

Pavlidis P, Živkovic D, Stamatakis A, Alachiotis N.

Mol Biol Evol. 2013 Sep;30(9):2224-34. doi: 10.1093/molbev/mst112. Epub 2013 Jun 18.

5.

Genomic scans for selective sweeps using SNP data.

Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C.

Genome Res. 2005 Nov;15(11):1566-75.

6.

Detecting recent selective sweeps while controlling for mutation rate and background selection.

Huber CD, DeGiorgio M, Hellmann I, Nielsen R.

Mol Ecol. 2015 Aug 20. doi: 10.1111/mec.13351. [Epub ahead of print]

PMID:
26290347
7.

An investigation of the statistical power of neutrality tests based on comparative and population genetic data.

Zhai W, Nielsen R, Slatkin M.

Mol Biol Evol. 2009 Feb;26(2):273-83. doi: 10.1093/molbev/msn231. Epub 2008 Oct 14.

8.

A test for ancient selective sweeps and an application to candidate sites in modern humans.

Racimo F, Kuhlwilm M, Slatkin M.

Mol Biol Evol. 2014 Dec;31(12):3344-58. doi: 10.1093/molbev/msu255. Epub 2014 Aug 28.

9.

Detecting positive selection from genome scans of linkage disequilibrium.

Huff CD, Harpending HC, Rogers AR.

BMC Genomics. 2010 Jan 5;11:8. doi: 10.1186/1471-2164-11-8.

10.
11.

Global analysis of ATM polymorphism reveals significant functional constraint.

Thorstenson YR, Shen P, Tusher VG, Wayne TL, Davis RW, Chu G, Oefner PJ.

Am J Hum Genet. 2001 Aug;69(2):396-412. Epub 2001 Jul 3.

12.

Soft shoulders ahead: spurious signatures of soft and partial selective sweeps result from linked hard sweeps.

Schrider DR, Mendes FK, Hahn MW, Kern AD.

Genetics. 2015 May;200(1):267-84. doi: 10.1534/genetics.115.174912. Epub 2015 Feb 25.

PMID:
25716978
13.

Detecting selective sweeps from pooled next-generation sequencing samples.

Boitard S, Schlötterer C, Nolte V, Pandey RV, Futschik A.

Mol Biol Evol. 2012 Sep;29(9):2177-86. doi: 10.1093/molbev/mss090. Epub 2012 Mar 12.

14.

Identification of selective sweeps using a dynamically adjusted number of linked microsatellites.

Wiehe T, Nolte V, Zivkovic D, Schlötterer C.

Genetics. 2007 Jan;175(1):207-18. Epub 2006 Oct 22.

16.

Linkage disequilibrium as a signature of selective sweeps.

Kim Y, Nielsen R.

Genetics. 2004 Jul;167(3):1513-24.

17.

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection.

Hobolth A, Dutheil JY, Hawks J, Schierup MH, Mailund T.

Genome Res. 2011 Mar;21(3):349-56. doi: 10.1101/gr.114751.110. Epub 2011 Jan 26.

18.

Improved haplotype-based detection of ongoing selective sweeps towards an application in Arabidopsis thaliana.

Günther T, Schmid KJ.

BMC Res Notes. 2011 Jul 5;4:232. doi: 10.1186/1756-0500-4-232.

19.

Confounding between recombination and selection, and the Ped/Pop method for detecting selection.

O'Reilly PF, Birney E, Balding DJ.

Genome Res. 2008 Aug;18(8):1304-13. doi: 10.1101/gr.067181.107. Epub 2008 Jul 10.

20.

Enhancing the mathematical properties of new haplotype homozygosity statistics for the detection of selective sweeps.

Garud NR, Rosenberg NA.

Theor Popul Biol. 2015 Jun;102:94-101. doi: 10.1016/j.tpb.2015.04.001. Epub 2015 Apr 16.

PMID:
25891325
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