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Items: 1 to 20 of 312

1.

Copy number variation of individual cattle genomes using next-generation sequencing.

Bickhart DM, Hou Y, Schroeder SG, Alkan C, Cardone MF, Matukumalli LK, Song J, Schnabel RD, Ventura M, Taylor JF, Garcia JF, Van Tassell CP, Sonstegard TS, Eichler EE, Liu GE.

Genome Res. 2012 Apr;22(4):778-90. doi: 10.1101/gr.133967.111. Epub 2012 Feb 2.

2.

Analysis of copy number variations among diverse cattle breeds.

Liu GE, Hou Y, Zhu B, Cardone MF, Jiang L, Cellamare A, Mitra A, Alexander LJ, Coutinho LL, Dell'Aquila ME, Gasbarre LC, Lacalandra G, Li RW, Matukumalli LK, Nonneman D, Regitano LC, Smith TP, Song J, Sonstegard TS, Van Tassell CP, Ventura M, Eichler EE, McDaneld TG, Keele JW.

Genome Res. 2010 May;20(5):693-703. doi: 10.1101/gr.105403.110. Epub 2010 Mar 8.

3.

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS.

BMC Genomics. 2011 Nov 15;12:559. doi: 10.1186/1471-2164-12-559.

4.

An initial comparative map of copy number variations in the goat (Capra hircus) genome.

Fontanesi L, Martelli PL, Beretti F, Riggio V, Dall'Olio S, Colombo M, Casadio R, Russo V, Portolano B.

BMC Genomics. 2010 Nov 17;11:639. doi: 10.1186/1471-2164-11-639.

5.

Fine mapping of copy number variations on two cattle genome assemblies using high density SNP array.

Hou Y, Bickhart DM, Hvinden ML, Li C, Song J, Boichard DA, Fritz S, Eggen A, DeNise S, Wiggans GR, Sonstegard TS, Van Tassell CP, Liu GE.

BMC Genomics. 2012 Aug 6;13:376. doi: 10.1186/1471-2164-13-376.

6.

Genome-wide patterns of copy number variation in the diversified chicken genomes using next-generation sequencing.

Yi G, Qu L, Liu J, Yan Y, Xu G, Yang N.

BMC Genomics. 2014 Nov 7;15:962. doi: 10.1186/1471-2164-15-962.

7.

Diversity and population-genetic properties of copy number variations and multicopy genes in cattle.

Bickhart DM, Xu L, Hutchison JL, Cole JB, Null DJ, Schroeder SG, Song J, Garcia JF, Sonstegard TS, Van Tassell CP, Schnabel RD, Taylor JF, Lewin HA, Liu GE.

DNA Res. 2016 Jun;23(3):253-62. doi: 10.1093/dnares/dsw013. Epub 2016 Apr 15.

8.

Copy number variation in the cattle genome.

Liu GE, Bickhart DM.

Funct Integr Genomics. 2012 Nov;12(4):609-24. doi: 10.1007/s10142-012-0289-9. Epub 2012 Jul 13. Review.

PMID:
22790923
9.

Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle.

Choi JW, Lee KT, Liao X, Stothard P, An HS, Ahn S, Lee S, Lee SY, Moore SS, Kim TH.

Mamm Genome. 2013 Apr;24(3-4):151-63. doi: 10.1007/s00335-013-9449-z. Epub 2013 Mar 30.

PMID:
23543395
10.

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins.

Jiang L, Jiang J, Yang J, Liu X, Wang J, Wang H, Ding X, Liu J, Zhang Q.

BMC Genomics. 2013 Feb 27;14:131. doi: 10.1186/1471-2164-14-131.

11.

Global copy number analyses by next generation sequencing provide insight into pig genome variation.

Jiang J, Wang J, Wang H, Zhang Y, Kang H, Feng X, Wang J, Yin Z, Bao W, Zhang Q, Liu JF.

BMC Genomics. 2014 Jul 14;15:593. doi: 10.1186/1471-2164-15-593.

12.

Genome-wide identification of copy number variations in Chinese Holstein.

Jiang L, Jiang J, Wang J, Ding X, Liu J, Zhang Q.

PLoS One. 2012;7(11):e48732. doi: 10.1371/journal.pone.0048732. Epub 2012 Nov 7.

13.

Analysis of copy number variants in the cattle genome.

Kijas JW, Barendse W, Barris W, Harrison B, McCulloch R, McWilliam S, Whan V.

Gene. 2011 Aug 15;482(1-2):73-7. doi: 10.1016/j.gene.2011.04.011. Epub 2011 May 18.

PMID:
21620936
14.

Systematic inference of copy-number genotypes from personal genome sequencing data reveals extensive olfactory receptor gene content diversity.

Waszak SM, Hasin Y, Zichner T, Olender T, Keydar I, Khen M, St├╝tz AM, Schlattl A, Lancet D, Korbel JO.

PLoS Comput Biol. 2010 Nov 11;6(11):e1000988. doi: 10.1371/journal.pcbi.1000988.

15.

Copy number variation in Fayoumi and Leghorn chickens analyzed using array comparative genomic hybridization.

Abernathy J, Li X, Jia X, Chou W, Lamont SJ, Crooijmans R, Zhou H.

Anim Genet. 2014 Jun;45(3):400-11. doi: 10.1111/age.12141. Epub 2014 Mar 15.

PMID:
24628374
16.

Personalized copy number and segmental duplication maps using next-generation sequencing.

Alkan C, Kidd JM, Marques-Bonet T, Aksay G, Antonacci F, Hormozdiari F, Kitzman JO, Baker C, Malig M, Mutlu O, Sahinalp SC, Gibbs RA, Eichler EE.

Nat Genet. 2009 Oct;41(10):1061-7. doi: 10.1038/ng.437. Epub 2009 Aug 30.

17.

Deleted copy number variation of Hanwoo and Holstein using next generation sequencing at the population level.

Shin DH, Lee HJ, Cho S, Kim HJ, Hwang JY, Lee CK, Jeong J, Yoon D, Kim H.

BMC Genomics. 2014 Mar 27;15:240. doi: 10.1186/1471-2164-15-240.

18.

Genomic characteristics of cattle copy number variations.

Hou Y, Liu GE, Bickhart DM, Cardone MF, Wang K, Kim ES, Matukumalli LK, Ventura M, Song J, VanRaden PM, Sonstegard TS, Van Tassell CP.

BMC Genomics. 2011 Feb 23;12:127. doi: 10.1186/1471-2164-12-127.

19.

A high-resolution map of segmental DNA copy number variation in the mouse genome.

Graubert TA, Cahan P, Edwin D, Selzer RR, Richmond TA, Eis PS, Shannon WD, Li X, McLeod HL, Cheverud JM, Ley TJ.

PLoS Genet. 2007 Jan 5;3(1):e3. Epub 2006 Nov 22.

20.

Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits.

da Silva JM, Giachetto PF, da Silva LO, Cintra LC, Paiva SR, Yamagishi ME, Caetano AR.

BMC Genomics. 2016 Jun 13;17:454. doi: 10.1186/s12864-016-2752-9.

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