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Items: 1 to 20 of 99

1.

Computational and statistical analysis of protein mass spectrometry data.

Noble WS, MacCoss MJ.

PLoS Comput Biol. 2012 Jan;8(1):e1002296. doi: 10.1371/journal.pcbi.1002296. Epub 2012 Jan 26. Review.

2.

Bioinformatics challenges in mass spectrometry-driven proteomics.

Martens L.

Methods Mol Biol. 2011;753:359-71. doi: 10.1007/978-1-61779-148-2_24.

PMID:
21604135
3.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
4.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

5.

Computational detection of protein complexes in AP-MS experiments.

Choi H.

Proteomics. 2012 May;12(10):1663-8. doi: 10.1002/pmic.201100508. Review.

PMID:
22711593
6.

Bioinformatic challenges in targeted proteomics.

Reker D, Malmström L.

J Proteome Res. 2012 Sep 7;11(9):4393-402. doi: 10.1021/pr300276f. Epub 2012 Aug 23.

PMID:
22866949
7.

Recent advances in computational analysis of mass spectrometry for proteomic profiling.

Sun CS, Markey MK.

J Mass Spectrom. 2011 May;46(5):443-56. doi: 10.1002/jms.1909.

PMID:
21500303
8.

Current trends in computational inference from mass spectrometry-based proteomics.

Webb-Robertson BJ, Cannon WR.

Brief Bioinform. 2007 Sep;8(5):304-17. Epub 2007 Jun 20. Review.

9.

Phosphoproteomics toolbox: computational biology, protein chemistry and mass spectrometry.

Hjerrild M, Gammeltoft S.

FEBS Lett. 2006 Sep 4;580(20):4764-70. Epub 2006 Aug 4.

10.

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments.

Wong JW, Sullivan MJ, Cagney G.

Brief Bioinform. 2008 Mar;9(2):156-65. Epub 2007 Sep 28. Review.

11.

Mass spectrometry-based proteomics in cell biology.

Walther TC, Mann M.

J Cell Biol. 2010 Aug 23;190(4):491-500. doi: 10.1083/jcb.201004052. Review.

12.

Bioinformatics analysis of mass spectrometry-based proteomics data sets.

Kumar C, Mann M.

FEBS Lett. 2009 Jun 5;583(11):1703-12. doi: 10.1016/j.febslet.2009.03.035. Epub 2009 Mar 21. Review.

13.

Protein identification using 2D-LC-MS/MS.

Delahunty C, Yates JR 3rd.

Methods. 2005 Mar;35(3):248-55. Epub 2005 Jan 12.

PMID:
15722221
14.

Computational analysis of shotgun proteomics data.

MacCoss MJ.

Curr Opin Chem Biol. 2005 Feb;9(1):88-94. Review.

PMID:
15701459
15.

Informatics for protein identification by mass spectrometry.

Johnson RS, Davis MT, Taylor JA, Patterson SD.

Methods. 2005 Mar;35(3):223-36. Epub 2005 Jan 13. Review.

PMID:
15722219
16.

Using ontologies in PROTEUS for modeling proteomics data mining applications.

Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P.

Stud Health Technol Inform. 2005;112:17-26.

PMID:
15923712
17.

The protein microscope: incorporating mass spectrometry into cell biology.

Bell AW, Nilsson T, Kearney RE, Bergeron JJ.

Nat Methods. 2007 Oct;4(10):783-4.

PMID:
17901866
18.

Empirical Bayes analysis of quantitative proteomics experiments.

Margolin AA, Ong SE, Schenone M, Gould R, Schreiber SL, Carr SA, Golub TR.

PLoS One. 2009 Oct 14;4(10):e7454. doi: 10.1371/journal.pone.0007454.

19.

Analysis of mass spectrometry data in proteomics.

Matthiesen R, Jensen ON.

Methods Mol Biol. 2008;453:105-22. doi: 10.1007/978-1-60327-429-6_4.

PMID:
18712299
20.

A proteomic tool for protein identification from tandem mass spectral data.

Zhao Y, Lin YH.

Proteomics. 2005 Mar;5(4):853-5.

PMID:
15668998
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