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Results: 1 to 20 of 54

Related Citations for PubMed (Select 22285829)

1.

Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA).

Schwalb B, Schulz D, Sun M, Zacher B, Dümcke S, Martin DE, Cramer P, Tresch A.

Bioinformatics. 2012 Mar 15;28(6):884-5. doi: 10.1093/bioinformatics/bts052. Epub 2012 Jan 28.

2.

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast.

Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, Mayer A, Sydow J, Marcinowski L, Dölken L, Martin DE, Tresch A, Cramer P.

Mol Syst Biol. 2011 Jan 4;7:458. doi: 10.1038/msb.2010.112.

3.

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation.

Sun M, Schwalb B, Schulz D, Pirkl N, Etzold S, Larivière L, Maier KC, Seizl M, Tresch A, Cramer P.

Genome Res. 2012 Jul;22(7):1350-9. doi: 10.1101/gr.130161.111. Epub 2012 Mar 30.

4.

Comprehensive identification and quantification of microbial transcriptomes by genome-wide unbiased methods.

Mäder U, Nicolas P, Richard H, Bessières P, Aymerich S.

Curr Opin Biotechnol. 2011 Feb;22(1):32-41. doi: 10.1016/j.copbio.2010.10.003. Epub 2010 Nov 10. Review.

PMID:
21074401
5.
6.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
7.
8.

Absolute quantification of the budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs.

Miura F, Kawaguchi N, Yoshida M, Uematsu C, Kito K, Sakaki Y, Ito T.

BMC Genomics. 2008 Nov 29;9:574. doi: 10.1186/1471-2164-9-574.

9.

Transcriptome-wide measurement of mRNA polyadenylation state.

Beilharz TH, Preiss T.

Methods. 2009 Jul;48(3):294-300. doi: 10.1016/j.ymeth.2009.02.003. Epub 2009 Feb 20.

PMID:
19233282
11.

When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.

Kresnowati MT, van Winden WA, Almering MJ, ten Pierick A, Ras C, Knijnenburg TA, Daran-Lapujade P, Pronk JT, Heijnen JJ, Daran JM.

Mol Syst Biol. 2006;2:49. Epub 2006 Sep 12.

12.

Transcriptome profiling of a Saccharomyces cerevisiae mutant with a constitutively activated Ras/cAMP pathway.

Jones DL, Petty J, Hoyle DC, Hayes A, Ragni E, Popolo L, Oliver SG, Stateva LI.

Physiol Genomics. 2003 Dec 16;16(1):107-18.

PMID:
14570984
13.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
14.

Transcriptomics: advances and approaches.

Dong Z, Chen Y.

Sci China Life Sci. 2013 Oct;56(10):960-7. doi: 10.1007/s11427-013-4557-2. Epub 2013 Oct 5. Review.

PMID:
24091688
15.

Absolute and relative quantification of mRNA expression (transcript analysis).

Hayes A, Rash BM, Zeef LA.

Methods Mol Biol. 2011;759:73-86. doi: 10.1007/978-1-61779-173-4_5.

PMID:
21863482
16.

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB.

PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162.

17.

Dynamic covariation between gene expression and proteome characteristics.

Sharabiani MT, Siermala M, Lehtinen TO, Vihinen M.

BMC Bioinformatics. 2005 Aug 30;6:215.

18.

Genome-wide profiling of uncapped mRNA.

Jiao Y, Riechmann JL.

Methods Mol Biol. 2012;876:207-16. doi: 10.1007/978-1-61779-809-2_17.

PMID:
22576098
19.

The transcriptome and its translation during recovery from cell cycle arrest in Saccharomyces cerevisiae.

Serikawa KA, Xu XL, MacKay VL, Law GL, Zong Q, Zhao LP, Bumgarner R, Morris DR.

Mol Cell Proteomics. 2003 Mar;2(3):191-204. Epub 2003 Apr 7.

20.
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